Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17175 and RALBFv3_RS17180 are separated by 129 nucleotides RALBFv3_RS17180 and RALBFv3_RS17185 are separated by 58 nucleotides RALBFv3_RS17185 and RALBFv3_RS24250 are separated by 63 nucleotides RALBFv3_RS24250 and RALBFv3_RS17190 are separated by 507 nucleotides RALBFv3_RS17190 and RALBFv3_RS24255 are separated by 148 nucleotides
RALBFv3_RS17175: RALBFv3_RS17175 - hypothetical protein, at 341,137 to 341,538
_RS17175
RALBFv3_RS17180: RALBFv3_RS17180 - hypothetical protein, at 341,668 to 342,009
_RS17180
RALBFv3_RS17185: RALBFv3_RS17185 - hypothetical protein, at 342,068 to 342,319
_RS17185
RALBFv3_RS24250: RALBFv3_RS24250 - protein phosphatase, at 342,383 to 343,033
_RS24250
RALBFv3_RS17190: RALBFv3_RS17190 - hypothetical protein, at 343,541 to 343,870
_RS17190
RALBFv3_RS24255: RALBFv3_RS24255 - hypothetical protein, at 344,019 to 344,411
_RS24255
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 341.486 kb on + strand, within RALBFv3_RS17175 at 341.487 kb on - strand, within RALBFv3_RS17175 at 341.500 kb on - strand at 341.506 kb on - strand at 341.638 kb on - strand at 341.673 kb on - strand at 341.673 kb on - strand at 341.685 kb on + strand at 341.686 kb on - strand at 341.686 kb on - strand at 341.686 kb on - strand at 341.771 kb on + strand, within RALBFv3_RS17180 at 341.771 kb on + strand, within RALBFv3_RS17180 at 341.771 kb on + strand, within RALBFv3_RS17180 at 341.771 kb on + strand, within RALBFv3_RS17180 at 341.772 kb on - strand, within RALBFv3_RS17180 at 341.772 kb on - strand, within RALBFv3_RS17180 at 341.772 kb on - strand, within RALBFv3_RS17180 at 341.772 kb on - strand, within RALBFv3_RS17180 at 341.835 kb on + strand, within RALBFv3_RS17180 at 341.836 kb on - strand, within RALBFv3_RS17180 at 341.842 kb on + strand, within RALBFv3_RS17180 at 341.843 kb on - strand, within RALBFv3_RS17180 at 341.843 kb on - strand, within RALBFv3_RS17180 at 341.851 kb on + strand, within RALBFv3_RS17180 at 341.851 kb on + strand, within RALBFv3_RS17180 at 341.852 kb on - strand, within RALBFv3_RS17180 at 341.880 kb on + strand, within RALBFv3_RS17180 at 342.036 kb on + strand at 342.037 kb on - strand at 342.037 kb on - strand at 342.037 kb on - strand at 342.037 kb on - strand at 342.081 kb on - strand at 342.198 kb on + strand, within RALBFv3_RS17185 at 342.199 kb on + strand, within RALBFv3_RS17185 at 342.200 kb on - strand, within RALBFv3_RS17185 at 342.200 kb on - strand, within RALBFv3_RS17185 at 342.258 kb on + strand, within RALBFv3_RS17185 at 342.258 kb on + strand, within RALBFv3_RS17185 at 342.258 kb on + strand, within RALBFv3_RS17185 at 342.258 kb on + strand, within RALBFv3_RS17185 at 342.258 kb on + strand, within RALBFv3_RS17185 at 342.259 kb on - strand, within RALBFv3_RS17185 at 342.259 kb on - strand, within RALBFv3_RS17185 at 342.317 kb on + strand at 342.342 kb on - strand at 342.352 kb on + strand at 342.352 kb on + strand at 342.352 kb on + strand at 342.352 kb on + strand at 342.353 kb on - strand at 342.357 kb on - strand at 342.463 kb on + strand, within RALBFv3_RS24250 at 342.473 kb on - strand, within RALBFv3_RS24250 at 342.551 kb on - strand, within RALBFv3_RS24250 at 342.631 kb on - strand, within RALBFv3_RS24250 at 342.677 kb on - strand, within RALBFv3_RS24250 at 342.757 kb on + strand, within RALBFv3_RS24250 at 342.758 kb on - strand, within RALBFv3_RS24250 at 342.848 kb on + strand, within RALBFv3_RS24250 at 342.848 kb on + strand, within RALBFv3_RS24250 at 342.849 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.874 kb on + strand, within RALBFv3_RS24250 at 342.957 kb on - strand, within RALBFv3_RS24250 at 342.968 kb on - strand, within RALBFv3_RS24250 at 343.091 kb on + strand at 343.091 kb on + strand at 343.206 kb on + strand at 343.207 kb on - strand at 343.238 kb on + strand at 343.239 kb on - strand at 343.273 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.324 kb on - strand at 343.462 kb on + strand at 343.463 kb on - strand at 343.543 kb on - strand at 343.543 kb on - strand at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.704 kb on + strand, within RALBFv3_RS17190 at 343.704 kb on + strand, within RALBFv3_RS17190 at 343.746 kb on + strand, within RALBFv3_RS17190 at 343.746 kb on + strand, within RALBFv3_RS17190 at 343.856 kb on - strand at 343.867 kb on + strand at 343.965 kb on - strand at 343.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 341,486 + RALBFv3_RS17175 0.87 -0.6 341,487 - RALBFv3_RS17175 0.87 -0.8 341,500 - -0.0 341,506 - +0.5 341,638 - +0.4 341,673 - -0.3 341,673 - -0.6 341,685 + +0.3 341,686 - +0.1 341,686 - -0.7 341,686 - -0.4 341,771 + RALBFv3_RS17180 0.30 -0.0 341,771 + RALBFv3_RS17180 0.30 -0.1 341,771 + RALBFv3_RS17180 0.30 +0.3 341,771 + RALBFv3_RS17180 0.30 +0.6 341,772 - RALBFv3_RS17180 0.30 -0.1 341,772 - RALBFv3_RS17180 0.30 -1.9 341,772 - RALBFv3_RS17180 0.30 -1.5 341,772 - RALBFv3_RS17180 0.30 -2.3 341,835 + RALBFv3_RS17180 0.49 -0.7 341,836 - RALBFv3_RS17180 0.49 -0.1 341,842 + RALBFv3_RS17180 0.51 -1.4 341,843 - RALBFv3_RS17180 0.51 -0.7 341,843 - RALBFv3_RS17180 0.51 -0.4 341,851 + RALBFv3_RS17180 0.54 -1.6 341,851 + RALBFv3_RS17180 0.54 +0.4 341,852 - RALBFv3_RS17180 0.54 +1.3 341,880 + RALBFv3_RS17180 0.62 +0.3 342,036 + -1.3 342,037 - -1.5 342,037 - -0.0 342,037 - +0.8 342,037 - +0.9 342,081 - -0.3 342,198 + RALBFv3_RS17185 0.52 -1.9 342,199 + RALBFv3_RS17185 0.52 +0.2 342,200 - RALBFv3_RS17185 0.52 -0.6 342,200 - RALBFv3_RS17185 0.52 -2.1 342,258 + RALBFv3_RS17185 0.75 +1.4 342,258 + RALBFv3_RS17185 0.75 +0.1 342,258 + RALBFv3_RS17185 0.75 +0.7 342,258 + RALBFv3_RS17185 0.75 -0.4 342,258 + RALBFv3_RS17185 0.75 -1.3 342,259 - RALBFv3_RS17185 0.76 -0.1 342,259 - RALBFv3_RS17185 0.76 -1.3 342,317 + -0.2 342,342 - -1.9 342,352 + -0.4 342,352 + +0.1 342,352 + +0.9 342,352 + -0.7 342,353 - -0.9 342,357 - -1.1 342,463 + RALBFv3_RS24250 0.12 +0.5 342,473 - RALBFv3_RS24250 0.14 +2.2 342,551 - RALBFv3_RS24250 0.26 +0.8 342,631 - RALBFv3_RS24250 0.38 -0.3 342,677 - RALBFv3_RS24250 0.45 -0.5 342,757 + RALBFv3_RS24250 0.57 -0.9 342,758 - RALBFv3_RS24250 0.58 -0.7 342,848 + RALBFv3_RS24250 0.71 +2.2 342,848 + RALBFv3_RS24250 0.71 +0.1 342,849 - RALBFv3_RS24250 0.72 -0.2 342,860 - RALBFv3_RS24250 0.73 +2.3 342,860 - RALBFv3_RS24250 0.73 +0.9 342,860 - RALBFv3_RS24250 0.73 -0.5 342,874 + RALBFv3_RS24250 0.75 -0.6 342,957 - RALBFv3_RS24250 0.88 +1.3 342,968 - RALBFv3_RS24250 0.90 -1.8 343,091 + +0.6 343,091 + -0.1 343,206 + -1.4 343,207 - +1.9 343,238 + -0.1 343,239 - -0.8 343,273 + -0.1 343,275 + -0.3 343,275 + +0.9 343,275 + +1.2 343,275 + +0.3 343,275 + -0.7 343,275 + -1.6 343,275 + +1.9 343,275 + -0.3 343,275 + -0.3 343,276 - +0.2 343,276 - +0.9 343,276 - +0.9 343,276 - -1.4 343,276 - -0.1 343,276 - -0.4 343,323 + -0.5 343,323 + -0.1 343,323 + -0.7 343,323 + -0.7 343,324 - -0.9 343,462 + -0.4 343,463 - -0.5 343,543 - -0.1 343,543 - -0.4 343,669 - RALBFv3_RS17190 0.39 +0.9 343,669 - RALBFv3_RS17190 0.39 +0.6 343,669 - RALBFv3_RS17190 0.39 +0.5 343,669 - RALBFv3_RS17190 0.39 -1.7 343,669 - RALBFv3_RS17190 0.39 +0.2 343,704 + RALBFv3_RS17190 0.49 -1.2 343,704 + RALBFv3_RS17190 0.49 -0.1 343,746 + RALBFv3_RS17190 0.62 -0.4 343,746 + RALBFv3_RS17190 0.62 -0.7 343,856 - -1.2 343,867 + -0.5 343,965 - +0.9 343,995 + -1.1
Or see this region's nucleotide sequence