Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23855

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
2,070,594	-				+1.3
2,070,594	-				+1.3
2,070,594	-				+0.3
2,070,608	+				-0.2
2,070,639	+				+1.3
2,070,639	+				-0.7
2,070,639	+				+1.0
2,070,640	-				+0.3
2,070,726	-		RALBFv3_RS09345	0.16	+1.3
2,070,737	+		RALBFv3_RS09345	0.17	-1.8
2,070,738	-		RALBFv3_RS09345	0.17	-2.2
2,070,818	+		RALBFv3_RS09345	0.26	+0.1
2,070,818	+		RALBFv3_RS09345	0.26	-0.4
2,070,818	+		RALBFv3_RS09345	0.26	-1.0
2,070,819	-		RALBFv3_RS09345	0.26	-1.0
2,070,819	-		RALBFv3_RS09345	0.26	-0.2
2,070,819	-		RALBFv3_RS09345	0.26	-0.1
2,070,819	-		RALBFv3_RS09345	0.26	+0.1
2,070,865	+		RALBFv3_RS09345	0.31	+1.3
2,070,865	+		RALBFv3_RS09345	0.31	-1.3
2,070,865	+		RALBFv3_RS09345	0.31	+1.3
2,070,865	+		RALBFv3_RS09345	0.31	-0.8
2,070,865	+		RALBFv3_RS09345	0.31	+2.3
2,070,866	-		RALBFv3_RS09345	0.31	+2.6
2,070,866	-		RALBFv3_RS09345	0.31	-1.0
2,070,866	-		RALBFv3_RS09345	0.31	+1.3
2,070,866	-		RALBFv3_RS09345	0.31	-0.6
2,070,866	-		RALBFv3_RS09345	0.31	-0.9
2,070,866	-		RALBFv3_RS09345	0.31	+1.3
2,070,866	-		RALBFv3_RS09345	0.31	+0.2
2,070,866	-		RALBFv3_RS09345	0.31	-0.3
2,070,866	-		RALBFv3_RS09345	0.31	-1.0
2,070,867	+		RALBFv3_RS09345	0.31	-0.3
2,070,867	+		RALBFv3_RS09345	0.31	+0.7
2,070,871	+		RALBFv3_RS09345	0.32	+1.3
2,070,871	+		RALBFv3_RS09345	0.32	+0.1
2,070,871	+		RALBFv3_RS09345	0.32	-0.1
2,070,872	-		RALBFv3_RS09345	0.32	-0.0
2,070,872	-		RALBFv3_RS09345	0.32	-0.4
2,070,872	-		RALBFv3_RS09345	0.32	+0.0
2,070,931	-		RALBFv3_RS09345	0.39	-2.5
2,071,083	-		RALBFv3_RS09345	0.55	-0.7
2,071,101	+		RALBFv3_RS09345	0.57	-1.7
2,071,101	+		RALBFv3_RS09345	0.57	+1.3
2,071,101	+		RALBFv3_RS09345	0.57	-0.8
2,071,101	+		RALBFv3_RS09345	0.57	+0.7
2,071,101	+		RALBFv3_RS09345	0.57	-0.9
2,071,101	+		RALBFv3_RS09345	0.57	-1.0
2,071,101	+		RALBFv3_RS09345	0.57	-0.2
2,071,102	-		RALBFv3_RS09345	0.57	-1.2
2,071,102	-		RALBFv3_RS09345	0.57	-1.7
2,071,158	+		RALBFv3_RS09345	0.64	+1.3
2,071,159	+		RALBFv3_RS09345	0.64	+1.0
2,071,159	+		RALBFv3_RS09345	0.64	+0.2
2,071,159	+		RALBFv3_RS09345	0.64	+1.3
2,071,159	+		RALBFv3_RS09345	0.64	+1.3
2,071,160	-		RALBFv3_RS09345	0.64	+1.3
2,071,160	-		RALBFv3_RS09345	0.64	-1.4
2,071,160	-		RALBFv3_RS09345	0.64	+1.3
2,071,291	+		RALBFv3_RS09345	0.78	-0.4
2,071,291	+		RALBFv3_RS09345	0.78	-0.3
2,071,291	+		RALBFv3_RS09345	0.78	+1.3
2,071,291	+		RALBFv3_RS09345	0.78	+0.9
2,071,292	-		RALBFv3_RS09345	0.79	+2.9
2,071,292	-		RALBFv3_RS09345	0.79	+1.3
2,071,312	+		RALBFv3_RS09345	0.81	+0.3
2,071,312	+		RALBFv3_RS09345	0.81	-0.1
2,071,312	+		RALBFv3_RS09345	0.81	-0.9
2,071,313	-		RALBFv3_RS09345	0.81	+1.3
2,071,313	-		RALBFv3_RS09345	0.81	+1.3
2,071,313	-		RALBFv3_RS09345	0.81	+0.3
2,071,334	+		RALBFv3_RS09345	0.83	+1.3
2,071,335	-		RALBFv3_RS09345	0.83	-0.7
2,071,335	-		RALBFv3_RS09345	0.83	-1.7
2,071,335	-		RALBFv3_RS09345	0.83	-0.6
2,071,335	-		RALBFv3_RS09345	0.83	-0.3
2,071,335	-		RALBFv3_RS09345	0.83	+1.0
2,071,351	+		RALBFv3_RS09345	0.85	-0.5
2,071,351	+		RALBFv3_RS09345	0.85	-0.8
2,071,352	-		RALBFv3_RS09345	0.85	+2.3
2,071,352	-		RALBFv3_RS09345	0.85	+0.3
2,071,352	-		RALBFv3_RS09345	0.85	-0.2
2,071,390	+		RALBFv3_RS09345	0.89	+1.3
2,071,390	+		RALBFv3_RS09345	0.89	+1.3
2,071,390	+		RALBFv3_RS09345	0.89	+0.7
2,071,390	+		RALBFv3_RS09345	0.89	-0.1
2,071,390	+		RALBFv3_RS09345	0.89	+1.3
2,071,390	+		RALBFv3_RS09345	0.89	-1.9
2,071,390	+		RALBFv3_RS09345	0.89	+0.3
2,071,390	+		RALBFv3_RS09345	0.89	-0.8
2,071,390	+		RALBFv3_RS09345	0.89	+1.3
2,071,391	-		RALBFv3_RS09345	0.89	-1.5
2,071,391	-		RALBFv3_RS09345	0.89	+1.3
2,071,391	-		RALBFv3_RS09345	0.89	+0.3
2,071,391	-		RALBFv3_RS09345	0.89	-1.0
2,071,393	-		RALBFv3_RS09345	0.90	+1.3
2,071,483	+				-1.3
2,071,483	+				-1.5
2,071,484	-				-0.7
2,071,484	-				-1.0
2,071,561	+				-0.9
2,071,561	+				+0.1
2,071,561	+				-0.6
2,071,561	+				+0.3
2,071,562	-				-1.1
2,071,562	-				+0.7
2,071,562	-				-0.5
2,071,562	-				+1.3
2,071,584	+				+0.3
2,071,584	+				-0.6
2,071,584	+				+1.0
2,071,585	-				-0.0
2,071,585	-				-2.3
2,071,676	+				+0.3
2,071,676	+				+0.0
2,071,700	+				-0.0
2,071,701	-				+1.3
2,071,707	+				-1.0
2,071,708	-				+1.0
2,071,729	+		RALBFv3_RS23855	0.11	-0.9
2,071,754	+		RALBFv3_RS23855	0.12	+0.3
2,071,755	-		RALBFv3_RS23855	0.13	-0.0
2,071,755	-		RALBFv3_RS23855	0.13	+0.3
2,071,777	+		RALBFv3_RS23855	0.14	+0.3
2,071,777	+		RALBFv3_RS23855	0.14	+0.6
2,071,777	+		RALBFv3_RS23855	0.14	-0.0
2,071,778	-		RALBFv3_RS23855	0.14	+2.1
2,071,778	-		RALBFv3_RS23855	0.14	-0.2
2,071,781	+		RALBFv3_RS23855	0.14	-0.8
2,071,781	+		RALBFv3_RS23855	0.14	-2.3
2,071,782	-		RALBFv3_RS23855	0.15	-0.5
2,071,798	+		RALBFv3_RS23855	0.16	+0.3
2,071,928	+		RALBFv3_RS23855	0.25	+0.6
2,071,928	+		RALBFv3_RS23855	0.25	-0.1
2,071,928	+		RALBFv3_RS23855	0.25	-1.5
2,071,929	-		RALBFv3_RS23855	0.25	+1.3
2,071,929	-		RALBFv3_RS23855	0.25	+0.3
2,071,929	-		RALBFv3_RS23855	0.25	-0.4
2,071,966	+		RALBFv3_RS23855	0.28	-1.5
2,072,067	+		RALBFv3_RS23855	0.35	-0.9
2,072,067	+		RALBFv3_RS23855	0.35	+0.6
2,072,067	+		RALBFv3_RS23855	0.35	-0.2
2,072,067	+		RALBFv3_RS23855	0.35	-1.0
2,072,068	-		RALBFv3_RS23855	0.35	-0.5
2,072,068	-		RALBFv3_RS23855	0.35	+0.3
2,072,068	-		RALBFv3_RS23855	0.35	+0.2
2,072,068	-		RALBFv3_RS23855	0.35	+1.3
2,072,068	-		RALBFv3_RS23855	0.35	+0.0
2,072,068	-		RALBFv3_RS23855	0.35	+1.2
2,072,068	-		RALBFv3_RS23855	0.35	-1.3
2,072,070	+		RALBFv3_RS23855	0.36	-0.0
2,072,070	+		RALBFv3_RS23855	0.36	-1.0
2,072,129	-		RALBFv3_RS23855	0.40	-0.9
2,072,133	+		RALBFv3_RS23855	0.40	-0.4
2,072,149	-		RALBFv3_RS23855	0.41	+1.3
2,072,331	+		RALBFv3_RS23855	0.55	+0.4
2,072,332	-		RALBFv3_RS23855	0.55	+0.3
2,072,350	+		RALBFv3_RS23855	0.56	-0.1
2,072,441	+		RALBFv3_RS23855	0.63	-0.3
2,072,441	+		RALBFv3_RS23855	0.63	-1.1
2,072,442	-		RALBFv3_RS23855	0.63	+0.2
2,072,451	+		RALBFv3_RS23855	0.63	-1.4
2,072,452	-		RALBFv3_RS23855	0.64	+0.7
2,072,499	-		RALBFv3_RS23855	0.67	-0.5
2,072,499	-		RALBFv3_RS23855	0.67	+0.2
2,072,499	-		RALBFv3_RS23855	0.67	-0.1
2,072,530	+		RALBFv3_RS23855	0.69	-0.3
2,072,530	+		RALBFv3_RS23855	0.69	+0.3
2,072,530	+		RALBFv3_RS23855	0.69	+0.3
2,072,530	+		RALBFv3_RS23855	0.69	+0.6
2,072,531	-		RALBFv3_RS23855	0.69	+0.1
2,072,543	+		RALBFv3_RS23855	0.70	+0.5
2,072,544	-		RALBFv3_RS23855	0.70	+0.5
2,072,544	-		RALBFv3_RS23855	0.70	-0.7
2,072,544	-		RALBFv3_RS23855	0.70	+1.3
2,072,668	-		RALBFv3_RS23855	0.79	-0.9
2,072,668	-		RALBFv3_RS23855	0.79	-0.4
2,072,668	-		RALBFv3_RS23855	0.79	-0.4
2,072,669	-		RALBFv3_RS23855	0.79	-0.0
2,072,691	+		RALBFv3_RS23855	0.81	+0.3
2,072,692	-		RALBFv3_RS23855	0.81	+0.7
2,072,722	+		RALBFv3_RS23855	0.83	+1.3
2,072,744	+		RALBFv3_RS23855	0.85	-0.3
2,072,744	+		RALBFv3_RS23855	0.85	+0.1
2,072,744	+		RALBFv3_RS23855	0.85	-1.5
2,072,745	-		RALBFv3_RS23855	0.85	-0.4
2,072,745	-		RALBFv3_RS23855	0.85	+1.0
2,072,765	+		RALBFv3_RS23855	0.86	-0.4
2,072,765	+		RALBFv3_RS23855	0.86	+1.3
2,072,765	+		RALBFv3_RS23855	0.86	-0.3
2,072,766	-		RALBFv3_RS23855	0.86	+1.1
2,072,766	-		RALBFv3_RS23855	0.86	+0.3
2,072,766	-		RALBFv3_RS23855	0.86	+0.3
2,072,766	-		RALBFv3_RS23855	0.86	-1.3
2,072,766	-		RALBFv3_RS23855	0.86	+1.3
2,072,766	-		RALBFv3_RS23855	0.86	-0.8
2,072,770	+		RALBFv3_RS23855	0.87	-0.3
2,072,771	-		RALBFv3_RS23855	0.87	-0.7
2,072,876	+				-0.1
2,072,876	+				-2.5
2,072,898	+				-0.6
2,072,898	+				+0.8
2,072,899	-				-1.4
2,072,942	+				-1.6
2,072,973	-				-0.8
2,072,973	-				+1.3
2,073,047	-				-0.7
2,073,081	+				+0.1
2,073,082	-				-1.8
2,073,125	+		RALBFv3_RS23860	0.11	+0.3
2,073,155	-		RALBFv3_RS23860	0.13	-1.3
2,073,214	-		RALBFv3_RS23860	0.19	-1.0
2,073,282	-		RALBFv3_RS23860	0.25	+0.1
2,073,301	+		RALBFv3_RS23860	0.26	-0.4
2,073,302	-		RALBFv3_RS23860	0.26	-1.1
2,073,346	-		RALBFv3_RS23860	0.30	+1.3
2,073,346	-		RALBFv3_RS23860	0.30	+0.4
2,073,346	-		RALBFv3_RS23860	0.30	+1.0
2,073,346	-		RALBFv3_RS23860	0.30	+0.3
2,073,357	+		RALBFv3_RS23860	0.31	-0.3
2,073,358	-		RALBFv3_RS23860	0.31	+0.1
2,073,404	+		RALBFv3_RS23860	0.35	+0.3
2,073,404	+		RALBFv3_RS23860	0.35	-0.9
2,073,445	+		RALBFv3_RS23860	0.39	+1.3
2,073,446	-		RALBFv3_RS23860	0.39	-0.3
2,073,446	-		RALBFv3_RS23860	0.39	+0.8
2,073,451	-		RALBFv3_RS23860	0.40	-0.4
2,073,480	+		RALBFv3_RS23860	0.42	+0.1
2,073,544	+		RALBFv3_RS23860	0.48	-0.7
2,073,585	+		RALBFv3_RS23860	0.52	-0.3
2,073,585	+		RALBFv3_RS23860	0.52	-0.0
2,073,586	-		RALBFv3_RS23860	0.52	-0.4
2,073,586	-		RALBFv3_RS23860	0.52	-0.4
2,073,586	-		RALBFv3_RS23860	0.52	+1.3
2,073,610	+		RALBFv3_RS23860	0.54	-0.8
2,073,611	-		RALBFv3_RS23860	0.54	-0.4
2,073,611	-		RALBFv3_RS23860	0.54	+1.3
2,073,611	-		RALBFv3_RS23860	0.54	+1.4
2,073,611	-		RALBFv3_RS23860	0.54	-0.6
2,073,611	-		RALBFv3_RS23860	0.54	+0.3
2,073,718	-		RALBFv3_RS23860	0.63	-0.0
2,073,718	-		RALBFv3_RS23860	0.63	-0.2
2,073,718	-		RALBFv3_RS23860	0.63	+0.1
2,073,727	-		RALBFv3_RS23860	0.64	+1.3
2,073,727	-		RALBFv3_RS23860	0.64	-2.8
2,073,757	+		RALBFv3_RS23860	0.67	+0.3
2,073,757	+		RALBFv3_RS23860	0.67	+1.3
2,073,758	-		RALBFv3_RS23860	0.67	+1.3
2,073,797	+		RALBFv3_RS23860	0.70	-0.3
2,073,797	+		RALBFv3_RS23860	0.70	+0.3
2,073,797	+		RALBFv3_RS23860	0.70	-2.0
2,073,797	+		RALBFv3_RS23860	0.70	+0.1
2,073,798	-		RALBFv3_RS23860	0.70	+1.3
2,073,798	-		RALBFv3_RS23860	0.70	-0.2
2,073,905	-		RALBFv3_RS23860	0.80	-0.5
2,073,909	+		RALBFv3_RS23860	0.80	-0.6
2,073,909	+		RALBFv3_RS23860	0.80	-1.0
2,073,909	+		RALBFv3_RS23860	0.80	+1.3
2,073,909	+		RALBFv3_RS23860	0.80	-1.4
2,073,910	-		RALBFv3_RS23860	0.80	-0.6
2,073,910	-		RALBFv3_RS23860	0.80	-0.4
2,073,911	-		RALBFv3_RS23860	0.80	+0.1