Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS22210 and RALBFv3_RS22215 are separated by 14 nucleotides RALBFv3_RS22215 and RALBFv3_RS22220 are separated by 216 nucleotides RALBFv3_RS22220 and RALBFv3_RS22225 are separated by 35 nucleotides
RALBFv3_RS22210: RALBFv3_RS22210 - siderophore-interacting protein, at 1,725,843 to 1,726,676
_RS22210
RALBFv3_RS22215: RALBFv3_RS22215 - hypothetical protein, at 1,726,691 to 1,726,945
_RS22215
RALBFv3_RS22220: RALBFv3_RS22220 - methyl-accepting chemotaxis protein, at 1,727,162 to 1,728,751
_RS22220
RALBFv3_RS22225: RALBFv3_RS22225 - sensor domain-containing diguanylate cyclase, at 1,728,787 to 1,732,323
_RS22225
Position (kb)
1727
1728
1729 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.692 kb on + strand at 1726.758 kb on + strand, within RALBFv3_RS22215 at 1726.758 kb on + strand, within RALBFv3_RS22215 at 1726.759 kb on - strand, within RALBFv3_RS22215 at 1726.759 kb on - strand, within RALBFv3_RS22215 at 1726.832 kb on + strand, within RALBFv3_RS22215 at 1727.175 kb on + strand at 1727.216 kb on + strand at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.439 kb on - strand, within RALBFv3_RS22220 at 1727.549 kb on + strand, within RALBFv3_RS22220 at 1727.549 kb on + strand, within RALBFv3_RS22220 at 1727.550 kb on - strand, within RALBFv3_RS22220 at 1727.579 kb on + strand, within RALBFv3_RS22220 at 1727.579 kb on + strand, within RALBFv3_RS22220 at 1728.857 kb on + strand at 1728.857 kb on + strand at 1728.857 kb on + strand at 1728.857 kb on + strand at 1728.858 kb on - strand at 1728.858 kb on - strand at 1728.858 kb on - strand at 1728.858 kb on - strand at 1728.858 kb on - strand at 1728.858 kb on - strand at 1728.860 kb on + strand at 1728.860 kb on + strand at 1728.860 kb on + strand at 1728.861 kb on - strand at 1728.861 kb on - strand at 1728.861 kb on - strand at 1729.064 kb on + strand at 1729.065 kb on - strand at 1729.079 kb on + strand at 1729.080 kb on - strand at 1729.280 kb on - strand, within RALBFv3_RS22225 at 1729.280 kb on - strand, within RALBFv3_RS22225 at 1729.508 kb on + strand, within RALBFv3_RS22225 at 1729.509 kb on - strand, within RALBFv3_RS22225 at 1729.509 kb on - strand, within RALBFv3_RS22225 at 1729.509 kb on - strand, within RALBFv3_RS22225 at 1729.509 kb on - strand, within RALBFv3_RS22225 at 1729.572 kb on - strand, within RALBFv3_RS22225 at 1729.640 kb on + strand, within RALBFv3_RS22225 at 1729.640 kb on + strand, within RALBFv3_RS22225 at 1729.640 kb on + strand, within RALBFv3_RS22225 at 1729.641 kb on - strand, within RALBFv3_RS22225 at 1729.641 kb on - strand, within RALBFv3_RS22225
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 1,726,400 - RALBFv3_RS22210 0.67 -0.6 1,726,400 - RALBFv3_RS22210 0.67 +0.2 1,726,400 - RALBFv3_RS22210 0.67 -0.2 1,726,692 + +0.6 1,726,758 + RALBFv3_RS22215 0.26 -0.8 1,726,758 + RALBFv3_RS22215 0.26 +0.2 1,726,759 - RALBFv3_RS22215 0.27 -0.9 1,726,759 - RALBFv3_RS22215 0.27 -0.5 1,726,832 + RALBFv3_RS22215 0.55 +2.2 1,727,175 + +0.8 1,727,216 + -1.0 1,727,438 + RALBFv3_RS22220 0.17 -0.7 1,727,438 + RALBFv3_RS22220 0.17 -1.1 1,727,438 + RALBFv3_RS22220 0.17 -1.2 1,727,438 + RALBFv3_RS22220 0.17 +0.6 1,727,439 - RALBFv3_RS22220 0.17 +0.5 1,727,549 + RALBFv3_RS22220 0.24 +0.9 1,727,549 + RALBFv3_RS22220 0.24 -0.2 1,727,550 - RALBFv3_RS22220 0.24 -1.1 1,727,579 + RALBFv3_RS22220 0.26 -0.6 1,727,579 + RALBFv3_RS22220 0.26 -1.3 1,728,857 + -0.6 1,728,857 + -0.1 1,728,857 + -0.8 1,728,857 + -0.1 1,728,858 - -0.3 1,728,858 - -0.5 1,728,858 - -0.4 1,728,858 - -0.6 1,728,858 - +0.9 1,728,858 - -1.4 1,728,860 + -1.9 1,728,860 + -0.1 1,728,860 + -1.7 1,728,861 - +0.9 1,728,861 - +0.3 1,728,861 - -0.9 1,729,064 + +0.9 1,729,065 - -0.1 1,729,079 + -0.5 1,729,080 - -0.7 1,729,280 - RALBFv3_RS22225 0.14 -0.0 1,729,280 - RALBFv3_RS22225 0.14 -0.3 1,729,508 + RALBFv3_RS22225 0.20 +0.3 1,729,509 - RALBFv3_RS22225 0.20 -0.7 1,729,509 - RALBFv3_RS22225 0.20 -0.8 1,729,509 - RALBFv3_RS22225 0.20 -1.4 1,729,509 - RALBFv3_RS22225 0.20 -0.4 1,729,572 - RALBFv3_RS22225 0.22 -1.7 1,729,640 + RALBFv3_RS22225 0.24 +1.9 1,729,640 + RALBFv3_RS22225 0.24 -0.2 1,729,640 + RALBFv3_RS22225 0.24 -0.3 1,729,641 - RALBFv3_RS22225 0.24 -0.4 1,729,641 - RALBFv3_RS22225 0.24 -0.7
Or see this region's nucleotide sequence