Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19390 and RALBFv3_RS19395 are separated by 124 nucleotides RALBFv3_RS19395 and RALBFv3_RS19400 overlap by 1 nucleotides
RALBFv3_RS19390: RALBFv3_RS19390 - XRE family transcriptional regulator, at 1,019,256 to 1,019,861
_RS19390
RALBFv3_RS19395: RALBFv3_RS19395 - glycine C-acetyltransferase, at 1,019,986 to 1,021,185
_RS19395
RALBFv3_RS19400: RALBFv3_RS19400 - L-threonine 3-dehydrogenase, at 1,021,185 to 1,022,141
_RS19400
Position (kb) 1019
1020
1021
1022 Strain fitness (log2 ratio) -2
-1
0
1 at 1019.033 kb on - strand at 1019.162 kb on + strand at 1019.338 kb on + strand, within RALBFv3_RS19390 at 1019.339 kb on - strand, within RALBFv3_RS19390 at 1019.486 kb on - strand, within RALBFv3_RS19390 at 1019.544 kb on - strand, within RALBFv3_RS19390 at 1020.007 kb on + strand at 1020.007 kb on + strand at 1020.007 kb on + strand at 1020.008 kb on - strand at 1020.008 kb on - strand at 1020.145 kb on + strand, within RALBFv3_RS19395 at 1020.146 kb on - strand, within RALBFv3_RS19395 at 1020.146 kb on - strand, within RALBFv3_RS19395 at 1020.803 kb on - strand, within RALBFv3_RS19395 at 1020.816 kb on + strand, within RALBFv3_RS19395 at 1020.896 kb on + strand, within RALBFv3_RS19395 at 1020.988 kb on + strand, within RALBFv3_RS19395 at 1020.989 kb on - strand, within RALBFv3_RS19395 at 1021.043 kb on - strand, within RALBFv3_RS19395 at 1021.043 kb on - strand, within RALBFv3_RS19395 at 1021.097 kb on + strand at 1021.788 kb on + strand, within RALBFv3_RS19400 at 1021.789 kb on - strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.830 kb on + strand, within RALBFv3_RS19400 at 1021.831 kb on - strand, within RALBFv3_RS19400 at 1021.831 kb on - strand, within RALBFv3_RS19400 at 1021.906 kb on - strand, within RALBFv3_RS19400 at 1022.079 kb on + strand at 1022.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 1,019,033 - +0.5 1,019,162 + +0.7 1,019,338 + RALBFv3_RS19390 0.14 +1.5 1,019,339 - RALBFv3_RS19390 0.14 +0.1 1,019,486 - RALBFv3_RS19390 0.38 -0.9 1,019,544 - RALBFv3_RS19390 0.48 +0.1 1,020,007 + -0.3 1,020,007 + +0.7 1,020,007 + -0.3 1,020,008 - -2.5 1,020,008 - +0.0 1,020,145 + RALBFv3_RS19395 0.13 +1.1 1,020,146 - RALBFv3_RS19395 0.13 -0.9 1,020,146 - RALBFv3_RS19395 0.13 -0.6 1,020,803 - RALBFv3_RS19395 0.68 -1.1 1,020,816 + RALBFv3_RS19395 0.69 +0.7 1,020,896 + RALBFv3_RS19395 0.76 -0.9 1,020,988 + RALBFv3_RS19395 0.83 -1.6 1,020,989 - RALBFv3_RS19395 0.84 -0.0 1,021,043 - RALBFv3_RS19395 0.88 -0.9 1,021,043 - RALBFv3_RS19395 0.88 -0.3 1,021,097 + -0.2 1,021,788 + RALBFv3_RS19400 0.63 +0.2 1,021,789 - RALBFv3_RS19400 0.63 +1.1 1,021,830 + RALBFv3_RS19400 0.67 +1.1 1,021,830 + RALBFv3_RS19400 0.67 -1.6 1,021,830 + RALBFv3_RS19400 0.67 -0.6 1,021,830 + RALBFv3_RS19400 0.67 -0.0 1,021,830 + RALBFv3_RS19400 0.67 +0.1 1,021,830 + RALBFv3_RS19400 0.67 +0.7 1,021,831 - RALBFv3_RS19400 0.68 +1.7 1,021,831 - RALBFv3_RS19400 0.68 -1.3 1,021,906 - RALBFv3_RS19400 0.75 -0.3 1,022,079 + -0.2 1,022,080 - -2.3
Or see this region's nucleotide sequence