Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17860 and RALBFv3_RS17865 are separated by 2 nucleotides RALBFv3_RS17865 and RALBFv3_RS17870 are separated by 78 nucleotides RALBFv3_RS17870 and RALBFv3_RS17875 are separated by 24 nucleotides
RALBFv3_RS17860: RALBFv3_RS17860 - NAD(P)-dependent oxidoreductase, at 512,251 to 512,961
_RS17860
RALBFv3_RS17865: RALBFv3_RS17865 - DeoR/GlpR transcriptional regulator, at 512,964 to 513,728
_RS17865
RALBFv3_RS17870: RALBFv3_RS17870 - glycosyl hydrolase, at 513,807 to 514,985
_RS17870
RALBFv3_RS17875: RALBFv3_RS17875 - sodium:solute symporter family protein, at 515,010 to 516,440
_RS17875
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 513.166 kb on + strand, within RALBFv3_RS17865 at 513.574 kb on + strand, within RALBFv3_RS17865 at 513.575 kb on - strand, within RALBFv3_RS17865 at 513.841 kb on + strand at 513.862 kb on + strand at 513.862 kb on + strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.863 kb on - strand at 513.920 kb on - strand at 513.920 kb on - strand at 513.962 kb on - strand, within RALBFv3_RS17870 at 514.130 kb on - strand, within RALBFv3_RS17870 at 514.177 kb on + strand, within RALBFv3_RS17870 at 514.322 kb on - strand, within RALBFv3_RS17870 at 514.660 kb on + strand, within RALBFv3_RS17870 at 514.786 kb on + strand, within RALBFv3_RS17870 at 514.787 kb on - strand, within RALBFv3_RS17870 at 514.787 kb on - strand, within RALBFv3_RS17870 at 514.903 kb on + strand at 514.964 kb on - strand at 515.051 kb on + strand at 515.052 kb on - strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.131 kb on + strand at 515.132 kb on - strand at 515.132 kb on - strand at 515.132 kb on - strand at 515.167 kb on + strand, within RALBFv3_RS17875 at 515.242 kb on + strand, within RALBFv3_RS17875 at 515.242 kb on + strand, within RALBFv3_RS17875 at 515.242 kb on + strand, within RALBFv3_RS17875 at 515.243 kb on - strand, within RALBFv3_RS17875 at 515.419 kb on + strand, within RALBFv3_RS17875 at 515.419 kb on + strand, within RALBFv3_RS17875 at 515.420 kb on - strand, within RALBFv3_RS17875 at 515.420 kb on - strand, within RALBFv3_RS17875 at 515.420 kb on - strand, within RALBFv3_RS17875 at 515.420 kb on - strand, within RALBFv3_RS17875 at 515.554 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.582 kb on - strand, within RALBFv3_RS17875 at 515.582 kb on - strand, within RALBFv3_RS17875 at 515.902 kb on + strand, within RALBFv3_RS17875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 513,166 + RALBFv3_RS17865 0.26 -0.2 513,574 + RALBFv3_RS17865 0.80 +0.8 513,575 - RALBFv3_RS17865 0.80 -0.0 513,841 + -0.2 513,862 + -0.4 513,862 + +0.8 513,863 - -0.2 513,863 - +0.0 513,863 - +0.5 513,863 - +0.0 513,920 - -0.2 513,920 - -0.2 513,962 - RALBFv3_RS17870 0.13 -0.6 514,130 - RALBFv3_RS17870 0.27 +0.8 514,177 + RALBFv3_RS17870 0.31 +0.6 514,322 - RALBFv3_RS17870 0.44 +0.4 514,660 + RALBFv3_RS17870 0.72 -1.5 514,786 + RALBFv3_RS17870 0.83 -0.4 514,787 - RALBFv3_RS17870 0.83 +0.6 514,787 - RALBFv3_RS17870 0.83 -0.0 514,903 + -0.8 514,964 - +0.8 515,051 + -0.1 515,052 - -0.5 515,131 + -0.5 515,131 + -0.8 515,131 + +0.2 515,131 + +0.4 515,131 + -0.3 515,131 + +1.5 515,131 + +0.1 515,132 - +0.0 515,132 - -0.2 515,132 - +0.3 515,167 + RALBFv3_RS17875 0.11 -0.7 515,242 + RALBFv3_RS17875 0.16 -1.4 515,242 + RALBFv3_RS17875 0.16 -0.1 515,242 + RALBFv3_RS17875 0.16 -2.3 515,243 - RALBFv3_RS17875 0.16 -1.6 515,419 + RALBFv3_RS17875 0.29 -0.6 515,419 + RALBFv3_RS17875 0.29 +0.3 515,420 - RALBFv3_RS17875 0.29 -2.9 515,420 - RALBFv3_RS17875 0.29 -0.7 515,420 - RALBFv3_RS17875 0.29 -0.1 515,420 - RALBFv3_RS17875 0.29 -0.6 515,554 + RALBFv3_RS17875 0.38 -0.5 515,581 + RALBFv3_RS17875 0.40 +0.8 515,581 + RALBFv3_RS17875 0.40 -0.2 515,581 + RALBFv3_RS17875 0.40 -0.2 515,581 + RALBFv3_RS17875 0.40 -0.7 515,582 - RALBFv3_RS17875 0.40 +0.3 515,582 - RALBFv3_RS17875 0.40 -0.4 515,902 + RALBFv3_RS17875 0.62 -0.3
Or see this region's nucleotide sequence