Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS04920

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS04910 and RALBFv3_RS04915 are separated by 236 nucleotidesRALBFv3_RS04915 and RALBFv3_RS04920 are separated by 14 nucleotidesRALBFv3_RS04920 and RALBFv3_RS04925 are separated by 22 nucleotidesRALBFv3_RS04925 and RALBFv3_RS04930 are separated by 290 nucleotides RALBFv3_RS04910: RALBFv3_RS04910 - gamma-glutamyltransferase family protein, at 1,096,542 to 1,098,170 _RS04910 RALBFv3_RS04915: RALBFv3_RS04915 - hypothetical protein, at 1,098,407 to 1,098,766 _RS04915 RALBFv3_RS04920: RALBFv3_RS04920 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,098,781 to 1,099,656 _RS04920 RALBFv3_RS04925: RALBFv3_RS04925 - hypothetical protein, at 1,099,679 to 1,100,227 _RS04925 RALBFv3_RS04930: RALBFv3_RS04930 - flagellar biosynthesis protein FlgM, at 1,100,518 to 1,101,411 _RS04930 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -2 -1 0 1 2at 1098.059 kb on + strandat 1098.060 kb on + strandat 1098.060 kb on + strandat 1098.061 kb on - strandat 1098.061 kb on - strandat 1098.284 kb on - strandat 1098.294 kb on + strandat 1098.326 kb on + strandat 1098.346 kb on + strandat 1098.347 kb on - strandat 1098.584 kb on + strand, within RALBFv3_RS04915at 1098.585 kb on - strand, within RALBFv3_RS04915at 1098.585 kb on - strand, within RALBFv3_RS04915at 1098.585 kb on - strand, within RALBFv3_RS04915at 1098.864 kb on + strandat 1098.865 kb on + strandat 1098.866 kb on - strandat 1098.868 kb on + strandat 1098.868 kb on + strandat 1098.946 kb on + strand, within RALBFv3_RS04920at 1098.947 kb on - strand, within RALBFv3_RS04920at 1098.948 kb on + strand, within RALBFv3_RS04920at 1098.948 kb on + strand, within RALBFv3_RS04920at 1098.948 kb on + strand, within RALBFv3_RS04920at 1098.949 kb on - strand, within RALBFv3_RS04920at 1099.051 kb on + strand, within RALBFv3_RS04920at 1099.051 kb on + strand, within RALBFv3_RS04920at 1099.051 kb on + strand, within RALBFv3_RS04920at 1099.051 kb on + strand, within RALBFv3_RS04920at 1099.096 kb on + strand, within RALBFv3_RS04920at 1099.096 kb on + strand, within RALBFv3_RS04920at 1099.096 kb on + strand, within RALBFv3_RS04920at 1099.096 kb on + strand, within RALBFv3_RS04920at 1099.097 kb on - strand, within RALBFv3_RS04920at 1099.097 kb on - strand, within RALBFv3_RS04920at 1099.097 kb on - strand, within RALBFv3_RS04920at 1099.097 kb on - strand, within RALBFv3_RS04920at 1099.097 kb on - strand, within RALBFv3_RS04920at 1099.174 kb on + strand, within RALBFv3_RS04920at 1099.174 kb on + strand, within RALBFv3_RS04920at 1099.174 kb on + strand, within RALBFv3_RS04920at 1099.174 kb on + strand, within RALBFv3_RS04920at 1099.175 kb on - strand, within RALBFv3_RS04920at 1099.386 kb on + strand, within RALBFv3_RS04920at 1099.654 kb on + strandat 1099.655 kb on - strandat 1099.739 kb on + strand, within RALBFv3_RS04925at 1099.851 kb on + strand, within RALBFv3_RS04925at 1099.852 kb on - strand, within RALBFv3_RS04925at 1100.025 kb on + strand, within RALBFv3_RS04925at 1100.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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1,098,059 + +1.1
1,098,060 + +2.1
1,098,060 + -0.8
1,098,061 - -0.8
1,098,061 - +0.1
1,098,284 - -0.5
1,098,294 + +0.9
1,098,326 + -0.3
1,098,346 + -0.6
1,098,347 - +0.2
1,098,584 + RALBFv3_RS04915 0.49 -1.2
1,098,585 - RALBFv3_RS04915 0.49 -1.2
1,098,585 - RALBFv3_RS04915 0.49 -1.2
1,098,585 - RALBFv3_RS04915 0.49 +0.7
1,098,864 + -1.1
1,098,865 + -0.2
1,098,866 - +0.8
1,098,868 + -1.2
1,098,868 + -2.7
1,098,946 + RALBFv3_RS04920 0.19 -0.6
1,098,947 - RALBFv3_RS04920 0.19 +0.1
1,098,948 + RALBFv3_RS04920 0.19 -0.1
1,098,948 + RALBFv3_RS04920 0.19 -0.5
1,098,948 + RALBFv3_RS04920 0.19 +1.1
1,098,949 - RALBFv3_RS04920 0.19 -0.4
1,099,051 + RALBFv3_RS04920 0.31 -0.7
1,099,051 + RALBFv3_RS04920 0.31 -2.2
1,099,051 + RALBFv3_RS04920 0.31 +0.5
1,099,051 + RALBFv3_RS04920 0.31 +0.4
1,099,096 + RALBFv3_RS04920 0.36 -0.0
1,099,096 + RALBFv3_RS04920 0.36 +0.4
1,099,096 + RALBFv3_RS04920 0.36 +0.1
1,099,096 + RALBFv3_RS04920 0.36 +1.1
1,099,097 - RALBFv3_RS04920 0.36 -0.5
1,099,097 - RALBFv3_RS04920 0.36 +1.1
1,099,097 - RALBFv3_RS04920 0.36 -0.8
1,099,097 - RALBFv3_RS04920 0.36 -1.2
1,099,097 - RALBFv3_RS04920 0.36 -0.5
1,099,174 + RALBFv3_RS04920 0.45 -0.4
1,099,174 + RALBFv3_RS04920 0.45 +0.2
1,099,174 + RALBFv3_RS04920 0.45 +1.1
1,099,174 + RALBFv3_RS04920 0.45 +0.7
1,099,175 - RALBFv3_RS04920 0.45 -1.0
1,099,386 + RALBFv3_RS04920 0.69 -0.8
1,099,654 + -0.3
1,099,655 - -0.1
1,099,739 + RALBFv3_RS04925 0.11 +1.4
1,099,851 + RALBFv3_RS04925 0.31 +1.7
1,099,852 - RALBFv3_RS04925 0.32 +0.1
1,100,025 + RALBFv3_RS04925 0.63 -0.9
1,100,244 + -1.2

Or see this region's nucleotide sequence