Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27245

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27240 and RR42_RS27245 are separated by 274 nucleotidesRR42_RS27245 and RR42_RS27250 are separated by 163 nucleotides RR42_RS27240: RR42_RS27240 - 4-coumarate--CoA ligase, at 1,463,169 to 1,464,722 _RS27240 RR42_RS27245: RR42_RS27245 - hypothetical protein, at 1,464,997 to 1,465,482 _RS27245 RR42_RS27250: RR42_RS27250 - citrate-proton symporter, at 1,465,646 to 1,466,932 _RS27250 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1464.001 kb on + strand, within RR42_RS27240at 1464.088 kb on + strand, within RR42_RS27240at 1464.090 kb on + strand, within RR42_RS27240at 1464.091 kb on - strand, within RR42_RS27240at 1464.102 kb on + strand, within RR42_RS27240at 1464.103 kb on - strand, within RR42_RS27240at 1464.217 kb on + strand, within RR42_RS27240at 1464.217 kb on + strand, within RR42_RS27240at 1464.218 kb on - strand, within RR42_RS27240at 1464.218 kb on - strand, within RR42_RS27240at 1464.218 kb on - strand, within RR42_RS27240at 1464.218 kb on - strand, within RR42_RS27240at 1464.218 kb on - strand, within RR42_RS27240at 1464.246 kb on + strand, within RR42_RS27240at 1464.246 kb on + strand, within RR42_RS27240at 1464.509 kb on - strand, within RR42_RS27240at 1464.509 kb on - strand, within RR42_RS27240at 1464.722 kb on + strandat 1464.722 kb on + strandat 1464.722 kb on + strandat 1464.722 kb on + strandat 1464.723 kb on - strandat 1464.723 kb on - strandat 1464.723 kb on - strandat 1464.979 kb on - strandat 1465.272 kb on + strand, within RR42_RS27245at 1465.402 kb on - strand, within RR42_RS27245at 1465.556 kb on + strandat 1465.590 kb on + strandat 1465.590 kb on + strandat 1465.591 kb on - strandat 1465.591 kb on - strandat 1465.732 kb on - strandat 1465.732 kb on - strandat 1465.770 kb on + strandat 1465.770 kb on + strandat 1465.771 kb on - strandat 1465.789 kb on + strand, within RR42_RS27250at 1465.896 kb on + strand, within RR42_RS27250at 1465.897 kb on - strand, within RR42_RS27250at 1465.897 kb on - strand, within RR42_RS27250at 1465.897 kb on - strand, within RR42_RS27250at 1466.159 kb on - strand, within RR42_RS27250at 1466.159 kb on - strand, within RR42_RS27250at 1466.160 kb on + strand, within RR42_RS27250at 1466.161 kb on - strand, within RR42_RS27250at 1466.175 kb on + strand, within RR42_RS27250at 1466.175 kb on + strand, within RR42_RS27250at 1466.175 kb on + strand, within RR42_RS27250at 1466.406 kb on + strand, within RR42_RS27250at 1466.407 kb on - strand, within RR42_RS27250at 1466.478 kb on + strand, within RR42_RS27250at 1466.478 kb on + strand, within RR42_RS27250at 1466.478 kb on + strand, within RR42_RS27250at 1466.479 kb on - strand, within RR42_RS27250at 1466.479 kb on - strand, within RR42_RS27250

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,464,001 + RR42_RS27240 0.54 +0.1
1,464,088 + RR42_RS27240 0.59 +0.6
1,464,090 + RR42_RS27240 0.59 +0.6
1,464,091 - RR42_RS27240 0.59 +0.6
1,464,102 + RR42_RS27240 0.60 -0.2
1,464,103 - RR42_RS27240 0.60 +0.1
1,464,217 + RR42_RS27240 0.67 +0.9
1,464,217 + RR42_RS27240 0.67 -1.0
1,464,218 - RR42_RS27240 0.68 +0.0
1,464,218 - RR42_RS27240 0.68 -0.2
1,464,218 - RR42_RS27240 0.68 +1.4
1,464,218 - RR42_RS27240 0.68 +0.6
1,464,218 - RR42_RS27240 0.68 +1.8
1,464,246 + RR42_RS27240 0.69 +0.4
1,464,246 + RR42_RS27240 0.69 +1.3
1,464,509 - RR42_RS27240 0.86 +0.2
1,464,509 - RR42_RS27240 0.86 +0.9
1,464,722 + +0.5
1,464,722 + -1.1
1,464,722 + +0.5
1,464,722 + -1.4
1,464,723 - -1.0
1,464,723 - +0.2
1,464,723 - -4.0
1,464,979 - +0.0
1,465,272 + RR42_RS27245 0.57 +0.7
1,465,402 - RR42_RS27245 0.83 +0.2
1,465,556 + +0.8
1,465,590 + -0.4
1,465,590 + +0.4
1,465,591 - -1.8
1,465,591 - +0.5
1,465,732 - -0.0
1,465,732 - -0.1
1,465,770 + -0.8
1,465,770 + +0.9
1,465,771 - +0.4
1,465,789 + RR42_RS27250 0.11 -0.2
1,465,896 + RR42_RS27250 0.19 -0.5
1,465,897 - RR42_RS27250 0.20 +0.8
1,465,897 - RR42_RS27250 0.20 +1.1
1,465,897 - RR42_RS27250 0.20 +0.4
1,466,159 - RR42_RS27250 0.40 -0.8
1,466,159 - RR42_RS27250 0.40 +0.7
1,466,160 + RR42_RS27250 0.40 +0.5
1,466,161 - RR42_RS27250 0.40 -0.9
1,466,175 + RR42_RS27250 0.41 -0.5
1,466,175 + RR42_RS27250 0.41 +0.2
1,466,175 + RR42_RS27250 0.41 +0.4
1,466,406 + RR42_RS27250 0.59 +0.6
1,466,407 - RR42_RS27250 0.59 +0.5
1,466,478 + RR42_RS27250 0.65 +0.2
1,466,478 + RR42_RS27250 0.65 +0.3
1,466,478 + RR42_RS27250 0.65 -0.5
1,466,479 - RR42_RS27250 0.65 -0.7
1,466,479 - RR42_RS27250 0.65 +0.5

Or see this region's nucleotide sequence