Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21315 and RR42_RS21320 are separated by 8 nucleotides RR42_RS21320 and RR42_RS21325 are separated by 24 nucleotides RR42_RS21325 and RR42_RS21330 are separated by 101 nucleotides
RR42_RS21315: RR42_RS21315 - ethanolamine permease, at 108,691 to 110,139
_RS21315
RR42_RS21320: RR42_RS21320 - ethanolamine ammonia-lyase, at 110,148 to 111,530
_RS21320
RR42_RS21325: RR42_RS21325 - ethanolamine ammonia-lyase, at 111,555 to 112,367
_RS21325
RR42_RS21330: RR42_RS21330 - phosphoserine phosphatase, at 112,469 to 113,758
_RS21330
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1
2 at 109.149 kb on + strand, within RR42_RS21315 at 109.150 kb on - strand, within RR42_RS21315 at 109.557 kb on + strand, within RR42_RS21315 at 109.637 kb on - strand, within RR42_RS21315 at 109.765 kb on + strand, within RR42_RS21315 at 109.765 kb on + strand, within RR42_RS21315 at 109.765 kb on + strand, within RR42_RS21315 at 109.766 kb on - strand, within RR42_RS21315 at 109.766 kb on - strand, within RR42_RS21315 at 109.766 kb on - strand, within RR42_RS21315 at 109.766 kb on - strand, within RR42_RS21315 at 109.849 kb on + strand, within RR42_RS21315 at 109.850 kb on - strand, within RR42_RS21315 at 109.850 kb on - strand, within RR42_RS21315 at 109.850 kb on - strand, within RR42_RS21315 at 109.927 kb on + strand, within RR42_RS21315 at 110.014 kb on + strand at 110.014 kb on + strand at 110.015 kb on - strand at 110.015 kb on - strand at 110.048 kb on - strand at 110.048 kb on - strand at 110.048 kb on - strand at 110.241 kb on + strand at 110.242 kb on - strand at 111.003 kb on + strand, within RR42_RS21320 at 111.003 kb on + strand, within RR42_RS21320 at 111.003 kb on + strand, within RR42_RS21320 at 111.004 kb on - strand, within RR42_RS21320 at 111.150 kb on + strand, within RR42_RS21320 at 111.151 kb on - strand, within RR42_RS21320 at 111.151 kb on - strand, within RR42_RS21320 at 111.156 kb on + strand, within RR42_RS21320 at 111.157 kb on - strand, within RR42_RS21320 at 111.275 kb on + strand, within RR42_RS21320 at 111.276 kb on - strand, within RR42_RS21320 at 111.360 kb on + strand, within RR42_RS21320 at 111.391 kb on - strand, within RR42_RS21320 at 111.407 kb on - strand at 111.529 kb on - strand at 111.801 kb on + strand, within RR42_RS21325 at 111.801 kb on + strand, within RR42_RS21325 at 111.802 kb on - strand, within RR42_RS21325 at 112.122 kb on + strand, within RR42_RS21325 at 112.184 kb on - strand, within RR42_RS21325 at 112.352 kb on + strand at 112.495 kb on - strand at 112.495 kb on - strand at 112.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 109,149 + RR42_RS21315 0.32 +0.1 109,150 - RR42_RS21315 0.32 +0.5 109,557 + RR42_RS21315 0.60 -0.3 109,637 - RR42_RS21315 0.65 +0.3 109,765 + RR42_RS21315 0.74 -2.2 109,765 + RR42_RS21315 0.74 -0.6 109,765 + RR42_RS21315 0.74 -0.5 109,766 - RR42_RS21315 0.74 -1.1 109,766 - RR42_RS21315 0.74 -0.6 109,766 - RR42_RS21315 0.74 +1.1 109,766 - RR42_RS21315 0.74 -0.5 109,849 + RR42_RS21315 0.80 +2.1 109,850 - RR42_RS21315 0.80 -0.0 109,850 - RR42_RS21315 0.80 -1.5 109,850 - RR42_RS21315 0.80 +0.3 109,927 + RR42_RS21315 0.85 -1.2 110,014 + -0.7 110,014 + +0.2 110,015 - -1.4 110,015 - +0.3 110,048 - +0.2 110,048 - -1.0 110,048 - +0.4 110,241 + +0.8 110,242 - -0.7 111,003 + RR42_RS21320 0.62 -2.1 111,003 + RR42_RS21320 0.62 -0.1 111,003 + RR42_RS21320 0.62 +0.6 111,004 - RR42_RS21320 0.62 -0.6 111,150 + RR42_RS21320 0.72 -0.6 111,151 - RR42_RS21320 0.73 -0.9 111,151 - RR42_RS21320 0.73 +0.1 111,156 + RR42_RS21320 0.73 -0.9 111,157 - RR42_RS21320 0.73 -2.2 111,275 + RR42_RS21320 0.81 +0.3 111,276 - RR42_RS21320 0.82 +0.6 111,360 + RR42_RS21320 0.88 -0.0 111,391 - RR42_RS21320 0.90 +2.6 111,407 - +0.2 111,529 - -0.5 111,801 + RR42_RS21325 0.30 +0.7 111,801 + RR42_RS21325 0.30 -1.5 111,802 - RR42_RS21325 0.30 -0.4 112,122 + RR42_RS21325 0.70 -1.2 112,184 - RR42_RS21325 0.77 -0.1 112,352 + +0.9 112,495 - +0.7 112,495 - -1.4 112,495 - -0.1
Or see this region's nucleotide sequence