Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS12585 and RR42_RS12590 are separated by 256 nucleotides RR42_RS12590 and RR42_RS12595 are separated by 31 nucleotides RR42_RS12595 and RR42_RS12600 are separated by 3 nucleotides RR42_RS12600 and RR42_RS12605 are separated by 74 nucleotides
RR42_RS12585: RR42_RS12585 - DNA helicase, at 2,704,554 to 2,705,945
_RS12585
RR42_RS12590: RR42_RS12590 - 50S ribosomal protein L9, at 2,706,202 to 2,706,654
_RS12590
RR42_RS12595: RR42_RS12595 - 30S ribosomal protein S18, at 2,706,686 to 2,706,964
_RS12595
RR42_RS12600: RR42_RS12600 - primosomal replication protein N, at 2,706,968 to 2,707,267
_RS12600
RR42_RS12605: RR42_RS12605 - 30S ribosomal protein S6, at 2,707,342 to 2,707,716
_RS12605
Position (kb)
2706
2707 Strain fitness (log2 ratio)
-2
-1
0
1 at 2705.958 kb on + strand at 2705.958 kb on + strand at 2705.958 kb on + strand at 2705.959 kb on - strand at 2706.049 kb on + strand at 2706.049 kb on + strand at 2706.050 kb on - strand at 2706.203 kb on + strand at 2706.203 kb on + strand at 2706.581 kb on + strand, within RR42_RS12590 at 2706.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 2,705,958 + -0.3 2,705,958 + -0.9 2,705,958 + -1.7 2,705,959 - +0.3 2,706,049 + +0.3 2,706,049 + +0.2 2,706,050 - -0.7 2,706,203 + +0.2 2,706,203 + -1.3 2,706,581 + RR42_RS12590 0.84 -1.7 2,706,708 + -1.8
Or see this region's nucleotide sequence