Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09015 and RR42_RS09020 are separated by 73 nucleotides RR42_RS09020 and RR42_RS09025 are separated by 246 nucleotides RR42_RS09025 and RR42_RS09030 are separated by 249 nucleotides
RR42_RS09015: RR42_RS09015 - trigger factor, at 1,894,180 to 1,895,541
_RS09015
RR42_RS09020: RR42_RS09020 - Clp protease ClpP, at 1,895,615 to 1,896,265
_RS09020
RR42_RS09025: RR42_RS09025 - Clp protease ATP-binding protein, at 1,896,512 to 1,897,786
_RS09025
RR42_RS09030: RR42_RS09030 - DNA-binding protein, at 1,898,036 to 1,900,447
_RS09030
Position (kb) 1896
1897
1898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1895.867 kb on + strand, within RR42_RS09020 at 1895.912 kb on + strand, within RR42_RS09020 at 1896.354 kb on + strand at 1896.356 kb on + strand at 1896.456 kb on + strand at 1896.495 kb on + strand at 1896.495 kb on + strand at 1896.495 kb on + strand at 1897.751 kb on + strand at 1897.751 kb on + strand at 1897.752 kb on - strand at 1897.803 kb on + strand at 1897.904 kb on + strand at 1898.007 kb on + strand at 1898.013 kb on + strand at 1898.726 kb on + strand, within RR42_RS09030
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,895,867 + RR42_RS09020 0.39 -2.6 1,895,912 + RR42_RS09020 0.46 -2.5 1,896,354 + -1.2 1,896,356 + +0.1 1,896,456 + +1.9 1,896,495 + +0.2 1,896,495 + +0.1 1,896,495 + +1.2 1,897,751 + -0.3 1,897,751 + -0.1 1,897,752 - -2.8 1,897,803 + +1.1 1,897,904 + +0.2 1,898,007 + -0.6 1,898,013 + -0.5 1,898,726 + RR42_RS09030 0.29 +0.1
Or see this region's nucleotide sequence