Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08245 and RR42_RS08250 are separated by 135 nucleotides RR42_RS08250 and RR42_RS08255 are separated by 52 nucleotides RR42_RS08255 and RR42_RS08260 are separated by 3 nucleotides RR42_RS08260 and RR42_RS08265 are separated by 9 nucleotides
RR42_RS08245: RR42_RS08245 - hypothetical protein, at 1,750,550 to 1,751,347
_RS08245
RR42_RS08250: RR42_RS08250 - coat protein, at 1,751,483 to 1,752,649
_RS08250
RR42_RS08255: RR42_RS08255 - hypothetical protein, at 1,752,702 to 1,753,112
_RS08255
RR42_RS08260: RR42_RS08260 - hypothetical protein, at 1,753,116 to 1,753,511
_RS08260
RR42_RS08265: RR42_RS08265 - hypothetical protein, at 1,753,521 to 1,753,964
_RS08265
Position (kb) 1751
1752
1753 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1750.607 kb on + strand at 1750.608 kb on - strand at 1751.078 kb on + strand, within RR42_RS08245 at 1751.256 kb on - strand, within RR42_RS08245 at 1751.722 kb on + strand, within RR42_RS08250 at 1751.722 kb on + strand, within RR42_RS08250 at 1751.789 kb on + strand, within RR42_RS08250 at 1751.873 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.293 kb on + strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.294 kb on - strand, within RR42_RS08250 at 1752.581 kb on + strand at 1753.153 kb on - strand at 1753.197 kb on + strand, within RR42_RS08260 at 1753.212 kb on + strand, within RR42_RS08260 at 1753.295 kb on + strand, within RR42_RS08260 at 1753.491 kb on - strand at 1753.608 kb on + strand, within RR42_RS08265
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,750,607 + +1.5 1,750,608 - -0.6 1,751,078 + RR42_RS08245 0.66 -1.0 1,751,256 - RR42_RS08245 0.88 -0.9 1,751,722 + RR42_RS08250 0.20 -0.4 1,751,722 + RR42_RS08250 0.20 -0.3 1,751,789 + RR42_RS08250 0.26 +0.4 1,751,873 + RR42_RS08250 0.33 -0.0 1,752,293 + RR42_RS08250 0.69 +0.3 1,752,293 + RR42_RS08250 0.69 +0.1 1,752,293 + RR42_RS08250 0.69 +0.9 1,752,293 + RR42_RS08250 0.69 +1.6 1,752,293 + RR42_RS08250 0.69 -0.2 1,752,293 + RR42_RS08250 0.69 -0.9 1,752,293 + RR42_RS08250 0.69 +1.4 1,752,293 + RR42_RS08250 0.69 -1.2 1,752,294 - RR42_RS08250 0.69 +1.0 1,752,294 - RR42_RS08250 0.69 +0.7 1,752,294 - RR42_RS08250 0.69 +0.1 1,752,581 + -3.4 1,753,153 - +0.5 1,753,197 + RR42_RS08260 0.20 -1.0 1,753,212 + RR42_RS08260 0.24 -1.2 1,753,295 + RR42_RS08260 0.45 +0.1 1,753,491 - -2.2 1,753,608 + RR42_RS08265 0.20 +1.2
Or see this region's nucleotide sequence