Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08090 and RR42_RS08095 are separated by 288 nucleotides RR42_RS08095 and RR42_RS08100 overlap by 4 nucleotides RR42_RS08100 and RR42_RS08105 are separated by 9 nucleotides RR42_RS08105 and RR42_RS08110 are separated by 102 nucleotides
RR42_RS08090: RR42_RS08090 - nuclease, at 1,730,870 to 1,731,664
_RS08090
RR42_RS08095: RR42_RS08095 - hypothetical protein, at 1,731,953 to 1,732,183
_RS08095
RR42_RS08100: RR42_RS08100 - hypothetical protein, at 1,732,180 to 1,732,536
_RS08100
RR42_RS08105: RR42_RS08105 - hypothetical protein, at 1,732,546 to 1,732,758
_RS08105
RR42_RS08110: RR42_RS08110 - hypothetical protein, at 1,732,861 to 1,733,082
_RS08110
Position (kb) 1731
1732
1733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1731.761 kb on + strand at 1731.930 kb on + strand at 1732.077 kb on + strand, within RR42_RS08095 at 1732.194 kb on + strand at 1732.517 kb on + strand at 1732.517 kb on + strand at 1732.518 kb on - strand at 1732.636 kb on + strand, within RR42_RS08105 at 1732.636 kb on + strand, within RR42_RS08105 at 1732.964 kb on + strand, within RR42_RS08110 at 1732.965 kb on - strand, within RR42_RS08110
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,731,761 + -0.2 1,731,930 + +0.1 1,732,077 + RR42_RS08095 0.54 +0.9 1,732,194 + -0.4 1,732,517 + -0.5 1,732,517 + +2.5 1,732,518 - -2.0 1,732,636 + RR42_RS08105 0.42 -0.0 1,732,636 + RR42_RS08105 0.42 +0.3 1,732,964 + RR42_RS08110 0.46 -1.3 1,732,965 - RR42_RS08110 0.47 +0.2
Or see this region's nucleotide sequence