Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05645

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05640 and RR42_RS05645 overlap by 4 nucleotidesRR42_RS05645 and RR42_RS05650 are separated by 33 nucleotidesRR42_RS05650 and RR42_RS05655 are separated by 240 nucleotides RR42_RS05640: RR42_RS05640 - amino acid ABC transporter permease, at 1,242,628 to 1,243,833 _RS05640 RR42_RS05645: RR42_RS05645 - urea ABC transporter ATP-binding protein, at 1,243,830 to 1,244,678 _RS05645 RR42_RS05650: RR42_RS05650 - urea ABC transporter ATP-binding protein, at 1,244,712 to 1,245,404 _RS05650 RR42_RS05655: RR42_RS05655 - urease accessory protein UreD, at 1,245,645 to 1,246,517 _RS05655 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -2 -1 0 1 2at 1242.880 kb on + strand, within RR42_RS05640at 1242.931 kb on + strand, within RR42_RS05640at 1242.946 kb on + strand, within RR42_RS05640at 1242.946 kb on + strand, within RR42_RS05640at 1242.947 kb on - strand, within RR42_RS05640at 1242.947 kb on - strand, within RR42_RS05640at 1242.979 kb on + strand, within RR42_RS05640at 1242.980 kb on - strand, within RR42_RS05640at 1243.150 kb on + strand, within RR42_RS05640at 1243.150 kb on + strand, within RR42_RS05640at 1243.151 kb on - strand, within RR42_RS05640at 1243.180 kb on + strand, within RR42_RS05640at 1243.181 kb on - strand, within RR42_RS05640at 1243.181 kb on - strand, within RR42_RS05640at 1243.348 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.423 kb on + strand, within RR42_RS05640at 1243.562 kb on + strand, within RR42_RS05640at 1243.651 kb on + strand, within RR42_RS05640at 1243.652 kb on - strand, within RR42_RS05640at 1243.708 kb on + strand, within RR42_RS05640at 1243.708 kb on + strand, within RR42_RS05640at 1243.988 kb on + strand, within RR42_RS05645at 1243.988 kb on + strand, within RR42_RS05645at 1243.989 kb on - strand, within RR42_RS05645at 1243.989 kb on - strand, within RR42_RS05645at 1244.353 kb on - strand, within RR42_RS05645at 1244.664 kb on + strandat 1244.711 kb on + strandat 1244.712 kb on - strandat 1244.868 kb on - strand, within RR42_RS05650at 1244.868 kb on - strand, within RR42_RS05650at 1245.050 kb on + strand, within RR42_RS05650at 1245.054 kb on + strand, within RR42_RS05650at 1245.055 kb on - strand, within RR42_RS05650at 1245.282 kb on + strand, within RR42_RS05650at 1245.282 kb on + strand, within RR42_RS05650at 1245.283 kb on - strand, within RR42_RS05650at 1245.315 kb on + strand, within RR42_RS05650at 1245.316 kb on - strand, within RR42_RS05650at 1245.430 kb on + strandat 1245.431 kb on - strandat 1245.586 kb on + strandat 1245.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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1,242,880 + RR42_RS05640 0.21 +0.1
1,242,931 + RR42_RS05640 0.25 +1.5
1,242,946 + RR42_RS05640 0.26 -0.8
1,242,946 + RR42_RS05640 0.26 -1.3
1,242,947 - RR42_RS05640 0.26 -0.3
1,242,947 - RR42_RS05640 0.26 -1.0
1,242,979 + RR42_RS05640 0.29 -0.5
1,242,980 - RR42_RS05640 0.29 +0.5
1,243,150 + RR42_RS05640 0.43 +1.1
1,243,150 + RR42_RS05640 0.43 +0.4
1,243,151 - RR42_RS05640 0.43 +0.2
1,243,180 + RR42_RS05640 0.46 +0.1
1,243,181 - RR42_RS05640 0.46 -0.9
1,243,181 - RR42_RS05640 0.46 -0.2
1,243,348 + RR42_RS05640 0.60 -0.3
1,243,423 + RR42_RS05640 0.66 +0.4
1,243,423 + RR42_RS05640 0.66 -0.1
1,243,423 + RR42_RS05640 0.66 +0.0
1,243,562 + RR42_RS05640 0.77 -2.2
1,243,651 + RR42_RS05640 0.85 +1.2
1,243,652 - RR42_RS05640 0.85 -1.8
1,243,708 + RR42_RS05640 0.90 -0.4
1,243,708 + RR42_RS05640 0.90 -0.8
1,243,988 + RR42_RS05645 0.19 -0.0
1,243,988 + RR42_RS05645 0.19 +0.2
1,243,989 - RR42_RS05645 0.19 +1.2
1,243,989 - RR42_RS05645 0.19 +0.7
1,244,353 - RR42_RS05645 0.62 +0.2
1,244,664 + -0.0
1,244,711 + -0.5
1,244,712 - -0.1
1,244,868 - RR42_RS05650 0.23 +2.5
1,244,868 - RR42_RS05650 0.23 +0.0
1,245,050 + RR42_RS05650 0.49 -0.3
1,245,054 + RR42_RS05650 0.49 +0.2
1,245,055 - RR42_RS05650 0.49 -0.6
1,245,282 + RR42_RS05650 0.82 +1.8
1,245,282 + RR42_RS05650 0.82 +0.8
1,245,283 - RR42_RS05650 0.82 -0.1
1,245,315 + RR42_RS05650 0.87 -1.2
1,245,316 - RR42_RS05650 0.87 -0.8
1,245,430 + +2.0
1,245,431 - +0.5
1,245,586 + +0.1
1,245,587 - +1.7

Or see this region's nucleotide sequence