Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides RR42_RS03835 and RR42_RS03840 are separated by 112 nucleotides RR42_RS03840 and RR42_RS03845 are separated by 371 nucleotides
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
RR42_RS03840: RR42_RS03840 - molybdate ABC transporter substrate-binding protein, at 846,920 to 847,711
_RS03840
RR42_RS03845: RR42_RS03845 - 2', 3'-cyclic nucleotide 2'-phosphodiesterase, at 848,083 to 850,143
_RS03845
Position (kb) 846
847
848 Strain fitness (log2 ratio) -2
-1
0
1 at 846.110 kb on - strand at 846.110 kb on - strand at 846.137 kb on + strand at 846.263 kb on + strand, within RR42_RS03835 at 846.263 kb on + strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.437 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.822 kb on + strand at 846.823 kb on - strand at 846.915 kb on - strand at 846.922 kb on - strand at 846.935 kb on + strand at 847.149 kb on + strand, within RR42_RS03840 at 847.150 kb on - strand, within RR42_RS03840 at 847.237 kb on + strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.542 kb on + strand, within RR42_RS03840 at 847.774 kb on - strand at 847.881 kb on + strand at 847.964 kb on - strand at 847.964 kb on - strand at 847.964 kb on - strand at 847.964 kb on - strand at 847.964 kb on - strand at 847.964 kb on - strand at 848.276 kb on - strand at 848.281 kb on + strand at 848.416 kb on + strand, within RR42_RS03845 at 848.417 kb on - strand, within RR42_RS03845 at 848.464 kb on + strand, within RR42_RS03845 at 848.464 kb on + strand, within RR42_RS03845 at 848.464 kb on + strand, within RR42_RS03845 at 848.465 kb on - strand, within RR42_RS03845 at 848.465 kb on - strand, within RR42_RS03845 at 848.465 kb on - strand, within RR42_RS03845 at 848.465 kb on - strand, within RR42_RS03845 at 848.465 kb on - strand, within RR42_RS03845 at 848.525 kb on - strand, within RR42_RS03845 at 848.525 kb on - strand, within RR42_RS03845 at 848.536 kb on + strand, within RR42_RS03845 at 848.644 kb on + strand, within RR42_RS03845 at 848.644 kb on + strand, within RR42_RS03845 at 848.645 kb on - strand, within RR42_RS03845 at 848.680 kb on + strand, within RR42_RS03845 at 848.680 kb on + strand, within RR42_RS03845 at 848.680 kb on + strand, within RR42_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 846,110 - +0.1 846,110 - +0.7 846,137 + +0.2 846,263 + RR42_RS03835 0.19 -0.2 846,263 + RR42_RS03835 0.19 -2.3 846,264 - RR42_RS03835 0.19 +0.5 846,264 - RR42_RS03835 0.19 -0.4 846,437 - RR42_RS03835 0.45 -0.1 846,550 - RR42_RS03835 0.62 -1.3 846,550 - RR42_RS03835 0.62 -0.8 846,624 - RR42_RS03835 0.73 -2.2 846,624 - RR42_RS03835 0.73 -0.2 846,822 + +1.3 846,823 - -0.4 846,915 - -0.6 846,922 - +0.9 846,935 + -0.3 847,149 + RR42_RS03840 0.29 -0.2 847,150 - RR42_RS03840 0.29 +0.8 847,237 + RR42_RS03840 0.40 -0.5 847,238 - RR42_RS03840 0.40 +1.1 847,238 - RR42_RS03840 0.40 +0.1 847,238 - RR42_RS03840 0.40 +0.1 847,240 - RR42_RS03840 0.40 +1.2 847,240 - RR42_RS03840 0.40 -0.7 847,542 + RR42_RS03840 0.79 +1.1 847,774 - -0.5 847,881 + -0.2 847,964 - +0.5 847,964 - -2.2 847,964 - -0.2 847,964 - -0.4 847,964 - -0.8 847,964 - +0.6 848,276 - -1.8 848,281 + +0.4 848,416 + RR42_RS03845 0.16 +0.6 848,417 - RR42_RS03845 0.16 +0.1 848,464 + RR42_RS03845 0.18 -0.1 848,464 + RR42_RS03845 0.18 -0.3 848,464 + RR42_RS03845 0.18 -0.2 848,465 - RR42_RS03845 0.19 +1.0 848,465 - RR42_RS03845 0.19 +0.3 848,465 - RR42_RS03845 0.19 -0.7 848,465 - RR42_RS03845 0.19 +0.9 848,465 - RR42_RS03845 0.19 +0.8 848,525 - RR42_RS03845 0.21 -1.7 848,525 - RR42_RS03845 0.21 -0.1 848,536 + RR42_RS03845 0.22 -0.4 848,644 + RR42_RS03845 0.27 -0.0 848,644 + RR42_RS03845 0.27 +0.8 848,645 - RR42_RS03845 0.27 -0.2 848,680 + RR42_RS03845 0.29 -0.5 848,680 + RR42_RS03845 0.29 +0.2 848,680 + RR42_RS03845 0.29 +0.6
Or see this region's nucleotide sequence