Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01870 and BWI76_RS01875 are separated by 122 nucleotides BWI76_RS01875 and BWI76_RS01880 are separated by 69 nucleotides BWI76_RS01880 and BWI76_RS01885 are separated by 133 nucleotides BWI76_RS01885 and BWI76_RS01890 are separated by 90 nucleotides
BWI76_RS01870: BWI76_RS01870 - diacylglycerol kinase, at 382,614 to 382,982
_RS01870
BWI76_RS01875: BWI76_RS01875 - repressor LexA, at 383,105 to 383,713
_RS01875
BWI76_RS01880: BWI76_RS01880 - MATE family efflux transporter, at 383,783 to 385,099
_RS01880
BWI76_RS01885: BWI76_RS01885 - CsbD family protein, at 385,233 to 385,445
_RS01885
BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051
_RS01890
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -1
0
1
2 at 382.798 kb on - strand, within BWI76_RS01870 at 382.803 kb on - strand, within BWI76_RS01870 at 382.873 kb on + strand, within BWI76_RS01870 at 382.907 kb on - strand, within BWI76_RS01870 at 382.995 kb on - strand at 383.810 kb on + strand at 383.868 kb on - strand at 383.899 kb on - strand at 383.927 kb on - strand, within BWI76_RS01880 at 383.952 kb on + strand, within BWI76_RS01880 at 384.216 kb on - strand, within BWI76_RS01880 at 384.295 kb on - strand, within BWI76_RS01880 at 384.328 kb on + strand, within BWI76_RS01880 at 384.397 kb on + strand, within BWI76_RS01880 at 384.405 kb on - strand, within BWI76_RS01880 at 384.414 kb on + strand, within BWI76_RS01880 at 384.660 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.678 kb on - strand, within BWI76_RS01880 at 384.918 kb on + strand, within BWI76_RS01880 at 384.926 kb on - strand, within BWI76_RS01880 at 384.937 kb on - strand, within BWI76_RS01880 at 384.962 kb on + strand, within BWI76_RS01880 at 385.086 kb on - strand at 385.190 kb on + strand at 385.328 kb on + strand, within BWI76_RS01885 at 385.599 kb on - strand, within BWI76_RS01890 at 385.746 kb on + strand, within BWI76_RS01890 at 385.913 kb on + strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.937 kb on + strand, within BWI76_RS01890 at 386.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 382,798 - BWI76_RS01870 0.50 +0.2 382,803 - BWI76_RS01870 0.51 -0.5 382,873 + BWI76_RS01870 0.70 -0.9 382,907 - BWI76_RS01870 0.79 -0.5 382,995 - -0.4 383,810 + -0.1 383,868 - +0.1 383,899 - +1.2 383,927 - BWI76_RS01880 0.11 +0.6 383,952 + BWI76_RS01880 0.13 +0.8 384,216 - BWI76_RS01880 0.33 +0.8 384,295 - BWI76_RS01880 0.39 -0.1 384,328 + BWI76_RS01880 0.41 +1.5 384,397 + BWI76_RS01880 0.47 +1.7 384,405 - BWI76_RS01880 0.47 +1.2 384,414 + BWI76_RS01880 0.48 +1.0 384,660 + BWI76_RS01880 0.67 +0.7 384,670 + BWI76_RS01880 0.67 +0.1 384,670 + BWI76_RS01880 0.67 -0.1 384,678 - BWI76_RS01880 0.68 +0.9 384,918 + BWI76_RS01880 0.86 +0.4 384,926 - BWI76_RS01880 0.87 +2.1 384,937 - BWI76_RS01880 0.88 -0.2 384,962 + BWI76_RS01880 0.90 -0.2 385,086 - -0.1 385,190 + +0.2 385,328 + BWI76_RS01885 0.45 -0.9 385,599 - BWI76_RS01890 0.12 +2.1 385,746 + BWI76_RS01890 0.41 +1.5 385,913 + BWI76_RS01890 0.73 +1.5 385,921 - BWI76_RS01890 0.75 +0.4 385,921 - BWI76_RS01890 0.75 +0.4 385,937 + BWI76_RS01890 0.78 +2.5 386,040 + +1.6
Or see this region's nucleotide sequence