Strain Fitness in Shewanella oneidensis MR-1 around SO3838

Experiment: minimal media, aerobic, 0G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	minimal media, aerobic, 0G configuration
3,987,797	+				+0.9
3,987,862	-		SO3838	0.12	+0.1
3,987,879	+		SO3838	0.13	+0.3
3,987,934	+		SO3838	0.16	+1.3
3,988,019	+		SO3838	0.20	-0.4
3,988,027	-		SO3838	0.21	-0.2
3,988,056	+		SO3838	0.22	-2.3
3,988,057	+		SO3838	0.22	-1.6
3,988,145	-		SO3838	0.27	+1.5
3,988,182	-		SO3838	0.29	-0.1
3,988,190	+		SO3838	0.29	-0.6
3,988,222	-		SO3838	0.31	-0.7
3,988,265	-		SO3838	0.33	-0.4
3,988,265	-		SO3838	0.33	-0.6
3,988,356	+		SO3838	0.38	-0.6
3,988,363	+		SO3838	0.39	+0.2
3,988,388	+		SO3838	0.40	-0.7
3,988,563	+		SO3838	0.49	-0.4
3,988,571	-		SO3838	0.50	-0.2
3,988,571	-		SO3838	0.50	+0.9
3,988,571	-		SO3838	0.50	-1.1
3,988,571	-		SO3838	0.50	-0.4
3,988,575	+		SO3838	0.50	-0.1
3,988,576	-		SO3838	0.50	-1.1
3,988,583	-		SO3838	0.50	-0.5
3,988,607	+		SO3838	0.52	-0.1
3,988,609	+		SO3838	0.52	-0.3
3,988,619	+		SO3838	0.52	+0.1
3,988,619	+		SO3838	0.52	-0.1
3,988,619	+		SO3838	0.52	-0.6
3,988,619	+		SO3838	0.52	+0.1
3,988,619	+		SO3838	0.52	+0.5
3,988,621	+		SO3838	0.52	-0.4
3,988,621	+		SO3838	0.52	-0.1
3,988,627	-		SO3838	0.53	-0.4
3,988,675	-		SO3838	0.55	-0.1
3,988,724	-		SO3838	0.58	+0.9
3,988,742	+		SO3838	0.59	-0.3
3,988,747	+		SO3838	0.59	-0.5
3,988,747	+		SO3838	0.59	+0.1
3,988,749	+		SO3838	0.59	+0.8
3,988,755	-		SO3838	0.60	+0.7
3,988,755	-		SO3838	0.60	-0.2
3,988,757	-		SO3838	0.60	+1.4
3,988,757	-		SO3838	0.60	-1.3
3,988,770	+		SO3838	0.60	-0.1
3,988,778	-		SO3838	0.61	-0.5
3,988,778	-		SO3838	0.61	-0.6
3,988,841	+		SO3838	0.64	+1.9
3,988,849	-		SO3838	0.65	+0.5
3,988,850	+		SO3838	0.65	+0.4
3,988,858	-		SO3838	0.65	-0.4
3,988,924	-		SO3838	0.69	-1.1
3,988,931	+		SO3838	0.69	-0.1
3,988,942	+		SO3838	0.70	+0.4
3,988,942	+		SO3838	0.70	-0.6
3,988,942	+		SO3838	0.70	-0.6
3,988,942	+		SO3838	0.70	+0.2
3,988,942	+		SO3838	0.70	-0.6
3,988,942	+		SO3838	0.70	-0.2
3,988,942	+		SO3838	0.70	-0.6
3,988,942	+		SO3838	0.70	-0.3
3,988,950	-		SO3838	0.70	-0.3
3,988,950	-		SO3838	0.70	-0.2
3,988,950	-		SO3838	0.70	-0.9
3,988,950	-		SO3838	0.70	+0.3
3,988,952	+		SO3838	0.70	-0.6
3,988,972	+		SO3838	0.71	-0.8
3,988,981	-		SO3838	0.72	-0.4
3,989,020	+		SO3838	0.74	-0.3
3,989,020	+		SO3838	0.74	-0.3
3,989,020	+		SO3838	0.74	+0.1
3,989,020	+		SO3838	0.74	+0.4
3,989,020	+		SO3838	0.74	-0.7
3,989,020	+		SO3838	0.74	+0.1
3,989,027	+		SO3838	0.74	-0.9
3,989,028	-		SO3838	0.74	+0.1
3,989,028	-		SO3838	0.74	+1.0
3,989,028	-		SO3838	0.74	-2.4
3,989,028	-		SO3838	0.74	-0.5
3,989,028	-		SO3838	0.74	-1.5
3,989,035	-		SO3838	0.75	-0.1
3,989,066	+		SO3838	0.76	+0.0
3,989,085	+		SO3838	0.77	-1.9
3,989,096	-		SO3838	0.78	-0.1
3,989,098	+		SO3838	0.78	-1.1
3,989,101	-		SO3838	0.78	-0.6
3,989,106	-		SO3838	0.78	-0.1
3,989,122	+		SO3838	0.79	-0.9
3,989,125	-		SO3838	0.79	+1.9
3,989,130	-		SO3838	0.80	+0.3
3,989,175	+		SO3838	0.82	-0.2
3,989,226	-		SO3838	0.85	-0.3
3,989,363	+				-0.7
3,989,385	+				-0.4
3,989,393	-				-1.1
3,989,394	-				-0.1
3,989,395	+				-0.2
3,989,405	+				-1.3
3,989,405	+				-1.3
3,989,405	+				-0.6
3,989,405	+				+0.8
3,989,413	-				-0.9
3,989,413	-				-1.4
3,989,453	+				+0.5
3,989,459	-				-0.2
3,989,469	-				-2.6
3,989,471	+				-0.1
3,989,471	+				-0.7
3,989,471	+				+0.0
3,989,471	+				+0.3
3,989,471	+				+0.5
3,989,471	+				+0.1
3,989,471	+				-0.4
3,989,479	-				+0.4
3,989,479	-				-0.7
3,989,479	-				-1.6
3,989,479	-				-0.9
3,989,479	-				+0.0
3,989,479	-				-0.6
3,989,479	-				-0.9
3,989,481	+				-0.5
3,989,499	+				-0.1
3,989,507	-				-0.2
3,989,559	-				-0.3
3,989,611	+				-0.1
3,989,622	+				-2.2
3,989,622	+				-1.7
3,989,622	+				-0.4
3,989,622	+				+0.1
3,989,622	+				-0.6
3,989,622	+				-0.1
3,989,630	-				-0.3
3,989,630	-				+0.0
3,989,630	-				-0.7
3,989,658	+				+0.3
3,989,658	+				-1.1
3,989,659	+				-1.7
3,989,659	+				-2.1
3,989,659	+				-0.2
3,989,667	-				+0.4
3,989,667	-				-0.3
3,989,667	-				+1.1
3,989,668	+				+0.9
3,989,668	+				-1.6
3,989,668	+				+2.9
3,989,669	+				-0.7
3,989,676	-				+0.3
3,989,676	-				-0.1
3,989,676	-				-0.4
3,989,684	-				-0.0
3,989,691	-				+3.7
3,989,730	-				+0.5
3,989,757	+				+0.1
3,989,757	+				+0.9
3,989,765	-				-0.3
3,989,765	-				-0.1
3,989,765	-				+1.1
3,989,765	-				-2.5
3,989,854	-				+0.5
3,989,854	-				+0.2
3,989,872	+				+0.9
3,989,872	+				+1.9
3,989,872	+				-0.4
3,989,880	-				+0.2
3,989,880	-				+0.3
3,989,880	-				-0.2
3,989,880	-				-0.1
3,989,880	-				+0.9
3,989,880	-				+0.3
3,989,880	-				-0.0
3,989,882	+				-1.1
3,989,882	+				-0.1
3,989,882	+				+0.9
3,989,893	+				+0.1
3,989,893	+				+0.2
3,989,901	-				+1.1
3,989,903	+				-0.7
3,989,903	+				+0.3
3,989,903	+				-0.1
3,989,911	-				-0.3
3,989,936	+				+0.3
3,989,936	-				+0.5
3,989,944	-				+0.5
3,989,969	-		SO3840	0.10	+0.0
3,989,984	-		SO3840	0.13	-1.7
3,989,995	+		SO3840	0.15	-0.6
3,990,018	-		SO3840	0.20	+1.0
3,990,029	+		SO3840	0.22	+0.4
3,990,029	+		SO3840	0.22	+0.0
3,990,038	-		SO3840	0.23	+0.7
3,990,061	+		SO3840	0.28	-0.2
3,990,071	-		SO3840	0.30	+0.4
3,990,154	+		SO3840	0.45	-0.5
3,990,177	-		SO3840	0.49	-0.4
3,990,251	+		SO3840	0.63	-0.3
3,990,264	-		SO3840	0.66	-0.2
3,990,284	-		SO3840	0.69	+0.9
3,990,379	+		SO3840	0.87	-0.1
3,990,379	+		SO3840	0.87	+0.1
3,990,410	+				-0.1