Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotides BWI76_RS26205 and BWI76_RS26210 are separated by 80 nucleotides
BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888
_RS26200
BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183
_RS26205
BWI76_RS26210: BWI76_RS26210 - glycogen debranching enzyme, at 5,422,264 to 5,424,240
_RS26210
Position (kb)
5420
5421
5422
5423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5420.112 kb on - strand, within BWI76_RS26200 at 5420.273 kb on - strand, within BWI76_RS26200 at 5420.275 kb on + strand, within BWI76_RS26200 at 5420.280 kb on + strand, within BWI76_RS26200 at 5420.283 kb on - strand, within BWI76_RS26200 at 5420.578 kb on + strand, within BWI76_RS26200 at 5420.670 kb on - strand, within BWI76_RS26200 at 5420.724 kb on - strand, within BWI76_RS26200 at 5420.852 kb on + strand at 5420.869 kb on - strand at 5420.896 kb on + strand at 5420.904 kb on - strand at 5421.000 kb on + strand at 5421.506 kb on - strand, within BWI76_RS26205 at 5421.640 kb on + strand, within BWI76_RS26205 at 5421.648 kb on - strand, within BWI76_RS26205 at 5421.946 kb on + strand, within BWI76_RS26205 at 5422.013 kb on + strand, within BWI76_RS26205 at 5422.099 kb on - strand at 5422.263 kb on - strand at 5422.333 kb on - strand at 5422.360 kb on + strand at 5422.373 kb on + strand at 5422.381 kb on - strand at 5422.462 kb on - strand, within BWI76_RS26210 at 5422.483 kb on + strand, within BWI76_RS26210 at 5422.516 kb on + strand, within BWI76_RS26210 at 5422.864 kb on - strand, within BWI76_RS26210 at 5422.910 kb on - strand, within BWI76_RS26210 at 5422.985 kb on + strand, within BWI76_RS26210
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,420,112 - BWI76_RS26200 0.46 -2.4 5,420,273 - BWI76_RS26200 0.57 -0.5 5,420,275 + BWI76_RS26200 0.57 -0.7 5,420,280 + BWI76_RS26200 0.58 -0.8 5,420,283 - BWI76_RS26200 0.58 -0.8 5,420,578 + BWI76_RS26200 0.78 -0.8 5,420,670 - BWI76_RS26200 0.85 +0.1 5,420,724 - BWI76_RS26200 0.88 -0.6 5,420,852 + +0.4 5,420,869 - +1.5 5,420,896 + +0.5 5,420,904 - +0.3 5,421,000 + +0.5 5,421,506 - BWI76_RS26205 0.48 +0.7 5,421,640 + BWI76_RS26205 0.58 +1.4 5,421,648 - BWI76_RS26205 0.59 +1.2 5,421,946 + BWI76_RS26205 0.82 +0.4 5,422,013 + BWI76_RS26205 0.87 -1.2 5,422,099 - +1.3 5,422,263 - -1.0 5,422,333 - -1.0 5,422,360 + +0.9 5,422,373 + +2.0 5,422,381 - -0.9 5,422,462 - BWI76_RS26210 0.10 -0.1 5,422,483 + BWI76_RS26210 0.11 +1.2 5,422,516 + BWI76_RS26210 0.13 -0.5 5,422,864 - BWI76_RS26210 0.30 -1.5 5,422,910 - BWI76_RS26210 0.33 +0.9 5,422,985 + BWI76_RS26210 0.36 +0.3
Or see this region's nucleotide sequence