Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19895 and BWI76_RS19900 are separated by 72 nucleotides BWI76_RS19900 and BWI76_RS19905 are separated by 102 nucleotides
BWI76_RS19895: BWI76_RS19895 - bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase, at 4,160,763 to 4,161,827
_RS19895
BWI76_RS19900: BWI76_RS19900 - FAD:protein FMN transferase, at 4,161,900 to 4,162,952
_RS19900
BWI76_RS19905: BWI76_RS19905 - OmpK36 porin, at 4,163,055 to 4,164,173
_RS19905
Position (kb)
4161
4162
4163 Strain fitness (log2 ratio)
-2
-1
0
1 at 4161.169 kb on + strand, within BWI76_RS19895 at 4161.170 kb on - strand, within BWI76_RS19895 at 4161.170 kb on - strand, within BWI76_RS19895 at 4162.324 kb on + strand, within BWI76_RS19900 at 4162.446 kb on + strand, within BWI76_RS19900 at 4162.783 kb on + strand, within BWI76_RS19900 at 4162.783 kb on + strand, within BWI76_RS19900 at 4162.791 kb on - strand, within BWI76_RS19900 at 4162.793 kb on + strand, within BWI76_RS19900 at 4162.882 kb on - strand at 4162.923 kb on - strand at 4162.983 kb on - strand at 4162.983 kb on - strand at 4163.006 kb on - strand at 4163.761 kb on - strand, within BWI76_RS19905 at 4163.897 kb on + strand, within BWI76_RS19905 at 4163.898 kb on - strand, within BWI76_RS19905
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,161,169 + BWI76_RS19895 0.38 -2.1 4,161,170 - BWI76_RS19895 0.38 -0.7 4,161,170 - BWI76_RS19895 0.38 -0.1 4,162,324 + BWI76_RS19900 0.40 -1.0 4,162,446 + BWI76_RS19900 0.52 +0.4 4,162,783 + BWI76_RS19900 0.84 +1.7 4,162,783 + BWI76_RS19900 0.84 +1.3 4,162,791 - BWI76_RS19900 0.85 +0.5 4,162,793 + BWI76_RS19900 0.85 +1.0 4,162,882 - -0.1 4,162,923 - +0.8 4,162,983 - -0.7 4,162,983 - -0.6 4,163,006 - -0.2 4,163,761 - BWI76_RS19905 0.63 -2.7 4,163,897 + BWI76_RS19905 0.75 +0.2 4,163,898 - BWI76_RS19905 0.75 -2.1
Or see this region's nucleotide sequence