Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18765 and BWI76_RS18770 are separated by 102 nucleotides BWI76_RS18770 and BWI76_RS18775 are separated by 127 nucleotides BWI76_RS18775 and BWI76_RS18780 are separated by 153 nucleotides
BWI76_RS18765: BWI76_RS18765 - FUSC family protein, at 3,888,583 to 3,889,641
_RS18765
BWI76_RS18770: BWI76_RS18770 - DNA gyrase inhibitor, at 3,889,744 to 3,890,217
_RS18770
BWI76_RS18775: BWI76_RS18775 - hypothetical protein, at 3,890,345 to 3,891,781
_RS18775
BWI76_RS18780: BWI76_RS18780 - D-alanyl-D-alanine carboxypeptidase, at 3,891,935 to 3,893,101
_RS18780
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-2
-1
0
1 at 3889.350 kb on - strand, within BWI76_RS18765 at 3889.536 kb on + strand at 3889.544 kb on - strand at 3890.075 kb on + strand, within BWI76_RS18770 at 3890.198 kb on + strand at 3890.278 kb on + strand at 3890.378 kb on + strand at 3890.544 kb on + strand, within BWI76_RS18775 at 3890.644 kb on - strand, within BWI76_RS18775 at 3891.253 kb on + strand, within BWI76_RS18775 at 3891.441 kb on + strand, within BWI76_RS18775 at 3891.449 kb on - strand, within BWI76_RS18775 at 3891.553 kb on - strand, within BWI76_RS18775 at 3891.782 kb on - strand at 3891.845 kb on - strand at 3891.850 kb on - strand at 3892.470 kb on - strand, within BWI76_RS18780 at 3892.495 kb on - strand, within BWI76_RS18780 at 3892.736 kb on + strand, within BWI76_RS18780
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,889,350 - BWI76_RS18765 0.72 +1.1 3,889,536 + -0.5 3,889,544 - +0.6 3,890,075 + BWI76_RS18770 0.70 -1.0 3,890,198 + -0.3 3,890,278 + +0.5 3,890,378 + -1.0 3,890,544 + BWI76_RS18775 0.14 +0.4 3,890,644 - BWI76_RS18775 0.21 -1.7 3,891,253 + BWI76_RS18775 0.63 -1.8 3,891,441 + BWI76_RS18775 0.76 -1.7 3,891,449 - BWI76_RS18775 0.77 -0.9 3,891,553 - BWI76_RS18775 0.84 +0.2 3,891,782 - +1.0 3,891,845 - +0.8 3,891,850 - +0.3 3,892,470 - BWI76_RS18780 0.46 -1.2 3,892,495 - BWI76_RS18780 0.48 -1.1 3,892,736 + BWI76_RS18780 0.69 -1.5
Or see this region's nucleotide sequence