Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14210 and BWI76_RS14215 are separated by 235 nucleotides BWI76_RS14215 and BWI76_RS14220 are separated by 21 nucleotides BWI76_RS14220 and BWI76_RS14225 are separated by 53 nucleotides
BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624
_RS14210
BWI76_RS14215: BWI76_RS14215 - hypothetical protein, at 2,975,860 to 2,976,141
_RS14215
BWI76_RS14220: BWI76_RS14220 - hypothetical protein, at 2,976,163 to 2,976,504
_RS14220
BWI76_RS14225: BWI76_RS14225 - anti-ECF sigma factor ChrR, at 2,976,558 to 2,977,229
_RS14225
Position (kb)
2975
2976
2977 Strain fitness (log2 ratio)
-2
-1
0
1 at 2974.902 kb on + strand, within BWI76_RS14210 at 2974.902 kb on + strand, within BWI76_RS14210 at 2974.904 kb on - strand, within BWI76_RS14210 at 2974.957 kb on - strand, within BWI76_RS14210 at 2974.998 kb on + strand, within BWI76_RS14210 at 2975.194 kb on + strand, within BWI76_RS14210 at 2975.275 kb on - strand, within BWI76_RS14210 at 2975.500 kb on + strand, within BWI76_RS14210 at 2975.969 kb on + strand, within BWI76_RS14215 at 2975.970 kb on - strand, within BWI76_RS14215 at 2975.998 kb on - strand, within BWI76_RS14215 at 2976.025 kb on - strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.110 kb on + strand, within BWI76_RS14215 at 2976.123 kb on + strand at 2976.133 kb on - strand at 2976.672 kb on + strand, within BWI76_RS14225 at 2976.680 kb on - strand, within BWI76_RS14225
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,974,902 + BWI76_RS14210 0.25 +0.1 2,974,902 + BWI76_RS14210 0.25 -0.6 2,974,904 - BWI76_RS14210 0.25 +0.8 2,974,957 - BWI76_RS14210 0.31 +0.0 2,974,998 + BWI76_RS14210 0.35 +1.3 2,975,194 + BWI76_RS14210 0.55 -0.1 2,975,275 - BWI76_RS14210 0.64 -0.7 2,975,500 + BWI76_RS14210 0.87 -0.1 2,975,969 + BWI76_RS14215 0.39 -0.3 2,975,970 - BWI76_RS14215 0.39 -2.5 2,975,998 - BWI76_RS14215 0.49 -1.1 2,976,025 - BWI76_RS14215 0.59 -1.7 2,976,097 + BWI76_RS14215 0.84 -0.3 2,976,097 + BWI76_RS14215 0.84 -0.0 2,976,110 + BWI76_RS14215 0.89 -1.3 2,976,123 + -0.5 2,976,133 - -0.2 2,976,672 + BWI76_RS14225 0.17 +0.3 2,976,680 - BWI76_RS14225 0.18 +0.4
Or see this region's nucleotide sequence