Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08605 and BWI76_RS08610 are separated by 328 nucleotides BWI76_RS08610 and BWI76_RS08615 overlap by 7 nucleotides
BWI76_RS08605: BWI76_RS08605 - phosphoglyceromutase, at 1,815,003 to 1,815,755
_RS08605
BWI76_RS08610: BWI76_RS08610 - galactose-1-epimerase, at 1,816,084 to 1,817,127
_RS08610
BWI76_RS08615: BWI76_RS08615 - galactokinase, at 1,817,121 to 1,818,269
_RS08615
Position (kb)
1816
1817
1818 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1815.204 kb on - strand, within BWI76_RS08605 at 1815.288 kb on - strand, within BWI76_RS08605 at 1815.423 kb on - strand, within BWI76_RS08605 at 1815.890 kb on + strand at 1815.950 kb on + strand at 1815.956 kb on + strand at 1815.959 kb on - strand at 1815.992 kb on - strand at 1815.993 kb on - strand at 1816.223 kb on + strand, within BWI76_RS08610 at 1816.238 kb on - strand, within BWI76_RS08610 at 1816.279 kb on - strand, within BWI76_RS08610 at 1816.305 kb on - strand, within BWI76_RS08610 at 1816.344 kb on - strand, within BWI76_RS08610 at 1816.479 kb on - strand, within BWI76_RS08610 at 1817.119 kb on + strand at 1817.129 kb on + strand at 1817.309 kb on + strand, within BWI76_RS08615 at 1817.583 kb on - strand, within BWI76_RS08615 at 1817.583 kb on - strand, within BWI76_RS08615 at 1817.737 kb on + strand, within BWI76_RS08615 at 1817.997 kb on + strand, within BWI76_RS08615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,815,204 - BWI76_RS08605 0.27 -1.4 1,815,288 - BWI76_RS08605 0.38 +0.2 1,815,423 - BWI76_RS08605 0.56 -2.0 1,815,890 + +0.1 1,815,950 + -0.7 1,815,956 + -1.4 1,815,959 - +2.1 1,815,992 - -0.1 1,815,993 - +1.5 1,816,223 + BWI76_RS08610 0.13 +0.6 1,816,238 - BWI76_RS08610 0.15 -0.0 1,816,279 - BWI76_RS08610 0.19 +0.6 1,816,305 - BWI76_RS08610 0.21 +0.7 1,816,344 - BWI76_RS08610 0.25 -0.6 1,816,479 - BWI76_RS08610 0.38 +0.3 1,817,119 + +0.3 1,817,129 + -0.3 1,817,309 + BWI76_RS08615 0.16 -0.1 1,817,583 - BWI76_RS08615 0.40 -0.3 1,817,583 - BWI76_RS08615 0.40 -0.7 1,817,737 + BWI76_RS08615 0.54 -0.5 1,817,997 + BWI76_RS08615 0.76 -0.7
Or see this region's nucleotide sequence