Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06740

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06730 and BWI76_RS06735 are separated by 111 nucleotidesBWI76_RS06735 and BWI76_RS06740 overlap by 1 nucleotidesBWI76_RS06740 and BWI76_RS06745 overlap by 4 nucleotidesBWI76_RS06745 and BWI76_RS06750 are separated by 100 nucleotides BWI76_RS06730: BWI76_RS06730 - lac repressor, at 1,412,617 to 1,413,690 _RS06730 BWI76_RS06735: BWI76_RS06735 - 50S ribosomal protein L31, at 1,413,802 to 1,414,065 _RS06735 BWI76_RS06740: BWI76_RS06740 - 50S ribosomal protein L36, at 1,414,065 to 1,414,205 _RS06740 BWI76_RS06745: BWI76_RS06745 - N-acetyltransferase GCN5, at 1,414,202 to 1,414,900 _RS06745 BWI76_RS06750: BWI76_RS06750 - GntR family transcriptional regulator with, at 1,415,001 to 1,416,455 _RS06750 Position (kb) 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1413.248 kb on + strand, within BWI76_RS06730at 1413.536 kb on - strand, within BWI76_RS06730at 1413.592 kb on + strandat 1413.622 kb on + strandat 1413.657 kb on + strandat 1413.657 kb on + strandat 1413.665 kb on - strandat 1413.907 kb on + strand, within BWI76_RS06735at 1414.080 kb on + strand, within BWI76_RS06740at 1414.090 kb on + strand, within BWI76_RS06740at 1414.169 kb on + strand, within BWI76_RS06740at 1414.533 kb on + strand, within BWI76_RS06745at 1414.656 kb on + strand, within BWI76_RS06745at 1414.752 kb on + strandat 1414.762 kb on + strand, within BWI76_RS06745at 1414.893 kb on - strandat 1414.903 kb on - strandat 1415.175 kb on - strand, within BWI76_RS06750at 1415.187 kb on + strand, within BWI76_RS06750at 1415.187 kb on + strand, within BWI76_RS06750

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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1,413,248 + BWI76_RS06730 0.59 -0.2
1,413,536 - BWI76_RS06730 0.86 -0.2
1,413,592 + -0.3
1,413,622 + +0.5
1,413,657 + -0.4
1,413,657 + -0.4
1,413,665 - -0.6
1,413,907 + BWI76_RS06735 0.40 -1.2
1,414,080 + BWI76_RS06740 0.11 -1.9
1,414,090 + BWI76_RS06740 0.18 -1.5
1,414,169 + BWI76_RS06740 0.74 -0.1
1,414,533 + BWI76_RS06745 0.47 -2.3
1,414,656 + BWI76_RS06745 0.65 +0.2
1,414,752 + -0.7
1,414,762 + BWI76_RS06745 0.80 +1.8
1,414,893 - -0.1
1,414,903 - +1.0
1,415,175 - BWI76_RS06750 0.12 +0.1
1,415,187 + BWI76_RS06750 0.13 -0.7
1,415,187 + BWI76_RS06750 0.13 -0.3

Or see this region's nucleotide sequence