Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06445 and BWI76_RS06450 are separated by 10 nucleotides BWI76_RS06450 and BWI76_RS06455 are separated by 13 nucleotides BWI76_RS06455 and BWI76_RS06460 overlap by 4 nucleotides BWI76_RS06460 and BWI76_RS06465 are separated by 153 nucleotides
BWI76_RS06445: BWI76_RS06445 - FAD-dependent oxidoreductase, at 1,354,409 to 1,356,112
_RS06445
BWI76_RS06450: BWI76_RS06450 - NIPSNAP family protein, at 1,356,123 to 1,356,443
_RS06450
BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133
_RS06455
BWI76_RS06460: BWI76_RS06460 - shikimate dehydrogenase, at 1,358,130 to 1,358,951
_RS06460
BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863
_RS06465
Position (kb) 1356
1357
1358
1359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1355.841 kb on - strand, within BWI76_RS06445 at 1356.277 kb on + strand, within BWI76_RS06450 at 1356.282 kb on + strand, within BWI76_RS06450 at 1356.418 kb on + strand at 1356.506 kb on - strand at 1356.552 kb on - strand at 1356.552 kb on - strand at 1356.591 kb on - strand at 1356.647 kb on - strand, within BWI76_RS06455 at 1356.678 kb on + strand, within BWI76_RS06455 at 1356.806 kb on + strand, within BWI76_RS06455 at 1357.312 kb on + strand, within BWI76_RS06455 at 1357.312 kb on + strand, within BWI76_RS06455 at 1357.368 kb on - strand, within BWI76_RS06455 at 1357.593 kb on + strand, within BWI76_RS06455 at 1357.601 kb on - strand, within BWI76_RS06455 at 1357.803 kb on + strand, within BWI76_RS06455 at 1357.868 kb on + strand, within BWI76_RS06455 at 1358.004 kb on + strand at 1358.076 kb on - strand at 1358.107 kb on - strand at 1358.214 kb on + strand, within BWI76_RS06460 at 1358.222 kb on - strand, within BWI76_RS06460 at 1358.255 kb on - strand, within BWI76_RS06460 at 1358.275 kb on + strand, within BWI76_RS06460 at 1358.498 kb on + strand, within BWI76_RS06460 at 1358.530 kb on - strand, within BWI76_RS06460 at 1358.747 kb on + strand, within BWI76_RS06460
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,355,841 - BWI76_RS06445 0.84 -0.5 1,356,277 + BWI76_RS06450 0.48 -0.5 1,356,282 + BWI76_RS06450 0.50 -0.3 1,356,418 + -0.3 1,356,506 - +1.2 1,356,552 - +0.6 1,356,552 - +0.4 1,356,591 - -2.3 1,356,647 - BWI76_RS06455 0.11 +0.4 1,356,678 + BWI76_RS06455 0.13 -1.0 1,356,806 + BWI76_RS06455 0.21 +0.6 1,357,312 + BWI76_RS06455 0.51 -2.0 1,357,312 + BWI76_RS06455 0.51 +1.9 1,357,368 - BWI76_RS06455 0.54 +0.6 1,357,593 + BWI76_RS06455 0.68 +0.4 1,357,601 - BWI76_RS06455 0.68 +0.1 1,357,803 + BWI76_RS06455 0.80 +0.0 1,357,868 + BWI76_RS06455 0.84 +1.7 1,358,004 + +0.2 1,358,076 - +0.6 1,358,107 - +1.0 1,358,214 + BWI76_RS06460 0.10 +0.3 1,358,222 - BWI76_RS06460 0.11 +0.2 1,358,255 - BWI76_RS06460 0.15 +1.0 1,358,275 + BWI76_RS06460 0.18 -0.3 1,358,498 + BWI76_RS06460 0.45 +1.2 1,358,530 - BWI76_RS06460 0.49 -0.7 1,358,747 + BWI76_RS06460 0.75 +0.3
Or see this region's nucleotide sequence