Strain Fitness in Shewanella oneidensis MR-1 around SO3128.2

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Ala-3 and SO_3130 are separated by 104 nucleotidesSO_3130 and SO3128.2 are separated by 18 nucleotidesSO3128.2 and SO3131 are separated by 261 nucleotidesSO3131 and tRNA-Val-5 are separated by 173 nucleotidestRNA-Val-5 and tRNA-Val-4 are separated by 48 nucleotidestRNA-Val-4 and tRNA-Val-3 are separated by 27 nucleotidestRNA-Val-3 and tRNA-Val-2 are separated by 45 nucleotidestRNA-Val-2 and tRNA-Val-1 are separated by 26 nucleotides SO_t072: tRNA-Ala-3 - tRNA-Ala (RefSeq), at 3,259,601 to 3,259,676 tRNA-Ala-3 SO_3130: SO_3130 - no description, at 3,259,781 to 3,260,620 _3130 SO3128.2: SO3128.2 - hypothetical glutamate tRNA synthetase (NCBI ptt file), at 3,260,639 to 3,261,190 SO3128.2 SO3131: SO3131 - hypothetical protein (NCBI ptt file), at 3,261,452 to 3,261,544 SO3131 SO_t073: tRNA-Val-5 - tRNA-Val (RefSeq), at 3,261,718 to 3,261,793 tRNA-Val-5 SO_t074: tRNA-Val-4 - tRNA-Val (RefSeq), at 3,261,842 to 3,261,917 tRNA-Val-4 SO_t075: tRNA-Val-3 - tRNA-Val (RefSeq), at 3,261,945 to 3,262,020 tRNA-Val-3 SO_t076: tRNA-Val-2 - tRNA-Val (RefSeq), at 3,262,066 to 3,262,141 tRNA-Val-2 SO_t077: tRNA-Val-1 - tRNA-Val (RefSeq), at 3,262,168 to 3,262,243 tRNA-Val-1 Position (kb) 3260 3261 3262Strain fitness (log2 ratio) -1 0 1at 3261.310 kb on + strandat 3261.318 kb on - strandat 3261.443 kb on - strandat 3261.509 kb on + strand, within SO3131at 3261.517 kb on - strand, within SO3131at 3261.517 kb on - strand, within SO3131at 3261.524 kb on - strand, within SO3131at 3261.596 kb on - strandat 3261.624 kb on - strandat 3262.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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3,261,310 + -0.4
3,261,318 - -1.0
3,261,443 - +0.9
3,261,509 + SO3131 0.61 -0.1
3,261,517 - SO3131 0.70 +0.3
3,261,517 - SO3131 0.70 -0.4
3,261,524 - SO3131 0.77 +0.5
3,261,596 - -0.7
3,261,624 - +0.0
3,262,143 + +1.3

Or see this region's nucleotide sequence