Strain Fitness in Shewanella oneidensis MR-1 around SO_r022

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Asp-2 and Sp5SE are separated by 34 nucleotidesSp5SE and Sp23SE are separated by 203 nucleotides SO_t102: tRNA-Asp-2 - tRNA-Asp (RefSeq), at 4,688,336 to 4,688,412 tRNA-Asp-2 SO_r022: Sp5SE - 5S ribosomal RNA (RefSeq), at 4,688,447 to 4,688,566 Sp5SE SO_r023: Sp23SE - 23S ribosomal RNA (RefSeq), at 4,688,770 to 4,691,662 Sp23SE Position (kb) 4688 4689Strain fitness (log2 ratio) -1 0 1at 4688.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,688,175 + +0.3

Or see this region's nucleotide sequence