Strain Fitness in Shewanella oneidensis MR-1 around SO_r021

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSp23SF and Sp16SF are separated by 316 nucleotides SO_r020: Sp23SF - 23S ribosomal RNA (RefSeq), at 4,679,660 to 4,682,552 Sp23SF SO_r021: Sp16SF - 16S ribosomal RNA (RefSeq), at 4,682,869 to 4,684,397 Sp16SF Position (kb) 4682 4683 4684 4685Strain fitness (log2 ratio) -1 0 1 2at 4684.769 kb on - strandat 4684.769 kb on - strandat 4684.769 kb on - strandat 4685.163 kb on + strandat 4685.164 kb on - strandat 4685.177 kb on - strandat 4685.185 kb on + strandat 4685.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,684,769 - -0.1
4,684,769 - -0.1
4,684,769 - -0.2
4,685,163 + -0.4
4,685,164 - -0.1
4,685,177 - +0.1
4,685,185 + +0.4
4,685,332 + +2.4

Or see this region's nucleotide sequence