Strain Fitness in Shewanella oneidensis MR-1 around SO_A0090

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0090 and SOA0091 overlap by 810 nucleotidesSOA0091 and SO_A0092 are separated by 122 nucleotides SO_A0089: SO_A0089 - no description, at 67,890 to 72,206 _A0089 SO_A0090: SO_A0090 - ISSod1, transposase OrfA (NCBI), at 69,314 to 70,473 _A0090 SOA0091: SOA0091 - ISSod1, transposase OrfB (NCBI ptt file), at 69,664 to 70,473 SOA0091 SO_A0092: SO_A0092 - no description, at 70,596 to 72,206 _A0092 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 68.321 kb on - strandat 68.342 kb on - strand, within SO_A0089at 68.342 kb on - strand, within SO_A0089at 68.342 kb on - strand, within SO_A0089at 68.342 kb on - strand, within SO_A0089at 68.344 kb on + strand, within SO_A0089at 68.346 kb on + strand, within SO_A0089at 68.349 kb on - strand, within SO_A0089at 68.354 kb on + strand, within SO_A0089at 68.354 kb on + strand, within SO_A0089at 68.354 kb on - strand, within SO_A0089at 68.354 kb on - strand, within SO_A0089at 68.362 kb on - strand, within SO_A0089at 68.364 kb on - strand, within SO_A0089at 68.371 kb on + strand, within SO_A0089at 68.379 kb on - strand, within SO_A0089at 68.383 kb on + strand, within SO_A0089at 68.390 kb on - strand, within SO_A0089at 68.401 kb on - strand, within SO_A0089at 68.411 kb on - strand, within SO_A0089at 68.420 kb on + strand, within SO_A0089at 68.422 kb on + strand, within SO_A0089at 68.430 kb on - strand, within SO_A0089at 68.455 kb on - strand, within SO_A0089at 68.471 kb on + strand, within SO_A0089at 68.481 kb on + strand, within SO_A0089at 68.481 kb on + strand, within SO_A0089at 68.486 kb on + strand, within SO_A0089at 68.494 kb on - strand, within SO_A0089at 68.494 kb on - strand, within SO_A0089at 68.497 kb on + strand, within SO_A0089at 68.499 kb on - strand, within SO_A0089at 68.502 kb on + strand, within SO_A0089at 68.510 kb on - strand, within SO_A0089at 68.549 kb on - strand, within SO_A0089at 68.598 kb on + strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.606 kb on - strand, within SO_A0089at 68.621 kb on + strand, within SO_A0089at 68.629 kb on + strand, within SO_A0089at 68.629 kb on - strand, within SO_A0089at 68.629 kb on - strand, within SO_A0089at 68.629 kb on - strand, within SO_A0089at 68.629 kb on - strand, within SO_A0089at 68.629 kb on - strand, within SO_A0089at 68.657 kb on + strand, within SO_A0089at 68.657 kb on + strand, within SO_A0089at 68.657 kb on + strand, within SO_A0089at 68.657 kb on + strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.665 kb on - strand, within SO_A0089at 68.678 kb on + strand, within SO_A0089at 68.678 kb on + strand, within SO_A0089at 68.686 kb on - strand, within SO_A0089at 68.686 kb on - strand, within SO_A0089at 68.689 kb on + strand, within SO_A0089at 68.721 kb on + strand, within SO_A0089at 68.726 kb on + strand, within SO_A0089at 68.729 kb on - strand, within SO_A0089at 68.729 kb on - strand, within SO_A0089at 68.729 kb on - strand, within SO_A0089at 68.732 kb on - strand, within SO_A0089at 68.733 kb on - strand, within SO_A0089at 68.733 kb on - strand, within SO_A0089at 68.733 kb on - strand, within SO_A0089at 68.746 kb on - strand, within SO_A0089at 68.780 kb on + strand, within SO_A0089at 68.795 kb on + strand, within SO_A0089at 68.795 kb on + strand, within SO_A0089at 68.795 kb on + strand, within SO_A0089at 68.795 kb on - strand, within SO_A0089at 68.803 kb on - strand, within SO_A0089at 68.803 kb on - strand, within SO_A0089at 68.803 kb on - strand, within SO_A0089at 68.803 kb on - strand, within SO_A0089at 68.822 kb on + strand, within SO_A0089at 68.822 kb on + strand, within SO_A0089at 68.822 kb on + strand, within SO_A0089at 68.830 kb on - strand, within SO_A0089at 68.830 kb on - strand, within SO_A0089at 68.830 kb on - strand, within SO_A0089at 68.857 kb on - strand, within SO_A0089at 68.859 kb on - strand, within SO_A0089at 68.859 kb on - strand, within SO_A0089at 68.861 kb on + strand, within SO_A0089at 68.861 kb on + strand, within SO_A0089at 68.907 kb on - strand, within SO_A0089at 68.909 kb on + strand, within SO_A0089at 68.909 kb on + strand, within SO_A0089at 68.916 kb on + strand, within SO_A0089at 68.917 kb on - strand, within SO_A0089at 68.917 kb on - strand, within SO_A0089at 68.921 kb on + strand, within SO_A0089at 68.924 kb on - strand, within SO_A0089at 68.929 kb on + strand, within SO_A0089at 68.973 kb on - strand, within SO_A0089at 68.975 kb on + strand, within SO_A0089at 69.077 kb on + strand, within SO_A0089at 69.108 kb on + strand, within SO_A0089at 69.108 kb on + strand, within SO_A0089at 69.116 kb on - strand, within SO_A0089at 69.129 kb on + strand, within SO_A0089at 69.129 kb on + strand, within SO_A0089at 69.137 kb on - strand, within SO_A0089at 69.137 kb on - strand, within SO_A0089at 69.141 kb on + strand, within SO_A0089at 69.142 kb on - strand, within SO_A0089at 69.149 kb on - strand, within SO_A0089at 69.154 kb on - strand, within SO_A0089at 69.154 kb on - strand, within SO_A0089at 69.199 kb on + strand, within SO_A0089at 69.207 kb on - strand, within SO_A0089at 69.230 kb on + strand, within SO_A0089at 69.251 kb on - strand, within SO_A0089at 69.251 kb on - strand, within SO_A0089at 69.251 kb on - strand, within SO_A0089at 69.256 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.261 kb on - strand, within SO_A0089at 69.262 kb on - strand, within SO_A0089at 70.472 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.477 kb on + strandat 70.482 kb on + strandat 70.482 kb on + strandat 70.490 kb on - strandat 70.490 kb on - strandat 70.490 kb on - strandat 70.499 kb on + strandat 70.542 kb on - strandat 70.542 kb on - strandat 70.542 kb on - strandat 70.569 kb on + strandat 70.571 kb on + strandat 70.571 kb on + strandat 70.571 kb on + strandat 70.579 kb on + strandat 70.579 kb on - strandat 70.579 kb on - strandat 70.590 kb on + strandat 70.608 kb on - strandat 70.608 kb on - strandat 70.686 kb on + strandat 70.728 kb on - strandat 70.763 kb on - strand, within SO_A0092at 70.778 kb on + strand, within SO_A0092at 70.814 kb on + strand, within SO_A0092at 70.822 kb on - strand, within SO_A0092at 70.847 kb on + strand, within SO_A0092at 70.869 kb on - strand, within SO_A0092at 70.917 kb on + strand, within SO_A0092at 70.925 kb on - strand, within SO_A0092at 70.945 kb on - strand, within SO_A0092at 70.991 kb on + strand, within SO_A0092at 71.043 kb on + strand, within SO_A0092at 71.043 kb on + strand, within SO_A0092at 71.043 kb on + strand, within SO_A0092at 71.043 kb on + strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.051 kb on - strand, within SO_A0092at 71.069 kb on + strand, within SO_A0092at 71.078 kb on + strand, within SO_A0092at 71.139 kb on - strand, within SO_A0092at 71.197 kb on - strand, within SO_A0092at 71.199 kb on + strand, within SO_A0092at 71.199 kb on + strand, within SO_A0092at 71.207 kb on - strand, within SO_A0092at 71.207 kb on - strand, within SO_A0092at 71.257 kb on - strand, within SO_A0092at 71.265 kb on - strand, within SO_A0092at 71.266 kb on - strand, within SO_A0092at 71.294 kb on + strand, within SO_A0092at 71.310 kb on + strand, within SO_A0092at 71.370 kb on - strand, within SO_A0092at 71.378 kb on - strandat 71.378 kb on - strand, within SO_A0092at 71.378 kb on - strand, within SO_A0092at 71.432 kb on + strand, within SO_A0092at 71.460 kb on - strand, within SO_A0092at 71.460 kb on - strand, within SO_A0092

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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68,321 - -0.9
68,342 - SO_A0089 0.10 -0.2
68,342 - SO_A0089 0.10 -0.4
68,342 - SO_A0089 0.10 -0.3
68,342 - SO_A0089 0.10 -0.5
68,344 + SO_A0089 0.11 -0.0
68,346 + SO_A0089 0.11 -0.4
68,349 - SO_A0089 0.11 +0.0
68,354 + SO_A0089 0.11 -0.2
68,354 + SO_A0089 0.11 +0.3
68,354 - SO_A0089 0.11 +0.2
68,354 - SO_A0089 0.11 -0.2
68,362 - SO_A0089 0.11 +0.3
68,364 - SO_A0089 0.11 +0.2
68,371 + SO_A0089 0.11 +0.3
68,379 - SO_A0089 0.11 +0.3
68,383 + SO_A0089 0.11 +0.3
68,390 - SO_A0089 0.12 -1.9
68,401 - SO_A0089 0.12 -0.2
68,411 - SO_A0089 0.12 -0.2
68,420 + SO_A0089 0.12 +0.5
68,422 + SO_A0089 0.12 -0.4
68,430 - SO_A0089 0.13 +0.4
68,455 - SO_A0089 0.13 +0.1
68,471 + SO_A0089 0.13 -0.5
68,481 + SO_A0089 0.14 -0.1
68,481 + SO_A0089 0.14 +0.0
68,486 + SO_A0089 0.14 +0.5
68,494 - SO_A0089 0.14 -0.4
68,494 - SO_A0089 0.14 -1.8
68,497 + SO_A0089 0.14 -0.3
68,499 - SO_A0089 0.14 +0.2
68,502 + SO_A0089 0.14 +0.1
68,510 - SO_A0089 0.14 +0.4
68,549 - SO_A0089 0.15 -0.0
68,598 + SO_A0089 0.16 +0.1
68,606 - SO_A0089 0.17 +0.7
68,606 - SO_A0089 0.17 +0.7
68,606 - SO_A0089 0.17 +0.0
68,606 - SO_A0089 0.17 -0.3
68,606 - SO_A0089 0.17 +0.1
68,606 - SO_A0089 0.17 -0.4
68,621 + SO_A0089 0.17 +1.0
68,629 + SO_A0089 0.17 +0.4
68,629 - SO_A0089 0.17 -0.6
68,629 - SO_A0089 0.17 +1.1
68,629 - SO_A0089 0.17 +0.6
68,629 - SO_A0089 0.17 +0.0
68,629 - SO_A0089 0.17 -0.0
68,657 + SO_A0089 0.18 +2.0
68,657 + SO_A0089 0.18 -0.2
68,657 + SO_A0089 0.18 -0.1
68,657 + SO_A0089 0.18 -2.1
68,665 - SO_A0089 0.18 +0.3
68,665 - SO_A0089 0.18 +0.4
68,665 - SO_A0089 0.18 -1.0
68,665 - SO_A0089 0.18 +0.1
68,665 - SO_A0089 0.18 +1.7
68,665 - SO_A0089 0.18 -0.4
68,678 + SO_A0089 0.18 +0.6
68,678 + SO_A0089 0.18 -0.9
68,686 - SO_A0089 0.18 -0.3
68,686 - SO_A0089 0.18 +0.6
68,689 + SO_A0089 0.19 -0.3
68,721 + SO_A0089 0.19 +0.1
68,726 + SO_A0089 0.19 +0.0
68,729 - SO_A0089 0.19 +0.7
68,729 - SO_A0089 0.19 +0.1
68,729 - SO_A0089 0.19 +0.2
68,732 - SO_A0089 0.20 -0.6
68,733 - SO_A0089 0.20 -0.3
68,733 - SO_A0089 0.20 +0.1
68,733 - SO_A0089 0.20 -0.1
68,746 - SO_A0089 0.20 -0.1
68,780 + SO_A0089 0.21 -0.5
68,795 + SO_A0089 0.21 -0.2
68,795 + SO_A0089 0.21 -0.4
68,795 + SO_A0089 0.21 +0.9
68,795 - SO_A0089 0.21 +0.1
68,803 - SO_A0089 0.21 -0.4
68,803 - SO_A0089 0.21 -1.6
68,803 - SO_A0089 0.21 -1.6
68,803 - SO_A0089 0.21 -0.3
68,822 + SO_A0089 0.22 +0.3
68,822 + SO_A0089 0.22 -0.9
68,822 + SO_A0089 0.22 +0.3
68,830 - SO_A0089 0.22 +1.1
68,830 - SO_A0089 0.22 -0.1
68,830 - SO_A0089 0.22 +0.7
68,857 - SO_A0089 0.22 +0.1
68,859 - SO_A0089 0.22 +0.1
68,859 - SO_A0089 0.22 -0.4
68,861 + SO_A0089 0.22 -0.1
68,861 + SO_A0089 0.22 -0.2
68,907 - SO_A0089 0.24 -0.2
68,909 + SO_A0089 0.24 +0.5
68,909 + SO_A0089 0.24 +0.6
68,916 + SO_A0089 0.24 +2.7
68,917 - SO_A0089 0.24 -0.7
68,917 - SO_A0089 0.24 +0.1
68,921 + SO_A0089 0.24 +0.5
68,924 - SO_A0089 0.24 +0.0
68,929 + SO_A0089 0.24 -0.4
68,973 - SO_A0089 0.25 +0.0
68,975 + SO_A0089 0.25 -0.6
69,077 + SO_A0089 0.27 -0.1
69,108 + SO_A0089 0.28 -1.1
69,108 + SO_A0089 0.28 +0.5
69,116 - SO_A0089 0.28 +0.9
69,129 + SO_A0089 0.29 -0.2
69,129 + SO_A0089 0.29 +0.4
69,137 - SO_A0089 0.29 +1.3
69,137 - SO_A0089 0.29 -0.4
69,141 + SO_A0089 0.29 -0.3
69,142 - SO_A0089 0.29 +0.1
69,149 - SO_A0089 0.29 -0.1
69,154 - SO_A0089 0.29 -0.4
69,154 - SO_A0089 0.29 -0.1
69,199 + SO_A0089 0.30 -0.2
69,207 - SO_A0089 0.31 +0.3
69,230 + SO_A0089 0.31 -0.0
69,251 - SO_A0089 0.32 +0.7
69,251 - SO_A0089 0.32 -0.5
69,251 - SO_A0089 0.32 +0.3
69,256 - SO_A0089 0.32 +1.4
69,261 - SO_A0089 0.32 -0.1
69,261 - SO_A0089 0.32 +0.4
69,261 - SO_A0089 0.32 -1.7
69,261 - SO_A0089 0.32 -0.1
69,261 - SO_A0089 0.32 +0.2
69,261 - SO_A0089 0.32 -0.0
69,261 - SO_A0089 0.32 -1.1
69,261 - SO_A0089 0.32 -1.2
69,261 - SO_A0089 0.32 +0.3
69,261 - SO_A0089 0.32 +0.1
69,261 - SO_A0089 0.32 -0.3
69,261 - SO_A0089 0.32 -0.2
69,261 - SO_A0089 0.32 -0.2
69,261 - SO_A0089 0.32 +0.1
69,261 - SO_A0089 0.32 -0.7
69,261 - SO_A0089 0.32 -0.2
69,261 - SO_A0089 0.32 +0.0
69,261 - SO_A0089 0.32 -0.8
69,262 - SO_A0089 0.32 -0.2
70,472 + +0.7
70,477 + -0.2
70,477 + +0.4
70,477 + +0.2
70,477 + -0.1
70,477 + -0.8
70,477 + +0.0
70,477 + -0.2
70,477 + +0.4
70,477 + -1.1
70,477 + -0.5
70,477 + +0.6
70,477 + -0.1
70,482 + +2.6
70,482 + +1.9
70,490 - +0.4
70,490 - +0.3
70,490 - +0.1
70,499 + -0.3
70,542 - +0.3
70,542 - -0.3
70,542 - -0.6
70,569 + -0.4
70,571 + -0.3
70,571 + +0.3
70,571 + +0.7
70,579 + -0.3
70,579 - -0.0
70,579 - -0.4
70,590 + +0.2
70,608 - +0.3
70,608 - +0.4
70,686 + +0.4
70,728 - -0.3
70,763 - SO_A0092 0.10 -0.0
70,778 + SO_A0092 0.11 +0.4
70,814 + SO_A0092 0.14 -0.2
70,822 - SO_A0092 0.14 +1.3
70,847 + SO_A0092 0.16 +0.5
70,869 - SO_A0092 0.17 -0.2
70,917 + SO_A0092 0.20 -0.3
70,925 - SO_A0092 0.20 -0.1
70,945 - SO_A0092 0.22 +0.1
70,991 + SO_A0092 0.25 +0.2
71,043 + SO_A0092 0.28 -0.7
71,043 + SO_A0092 0.28 -1.0
71,043 + SO_A0092 0.28 -0.4
71,043 + SO_A0092 0.28 +0.0
71,051 - SO_A0092 0.28 -0.7
71,051 - SO_A0092 0.28 -0.1
71,051 - SO_A0092 0.28 +0.4
71,051 - SO_A0092 0.28 +1.7
71,051 - SO_A0092 0.28 -0.1
71,051 - SO_A0092 0.28 -0.3
71,051 - SO_A0092 0.28 +0.0
71,069 + SO_A0092 0.29 -0.3
71,078 + SO_A0092 0.30 +0.3
71,139 - SO_A0092 0.34 -0.3
71,197 - SO_A0092 0.37 -1.4
71,199 + SO_A0092 0.37 -0.0
71,199 + SO_A0092 0.37 -0.1
71,207 - SO_A0092 0.38 -1.3
71,207 - SO_A0092 0.38 +1.4
71,257 - SO_A0092 0.41 -0.6
71,265 - SO_A0092 0.42 -0.3
71,266 - SO_A0092 0.42 +0.6
71,294 + SO_A0092 0.43 +0.3
71,310 + SO_A0092 0.44 -0.3
71,370 - SO_A0092 0.48 -0.3
71,378 - +0.7
71,378 - SO_A0092 0.49 -0.4
71,378 - SO_A0092 0.49 -0.1
71,432 + SO_A0092 0.52 +0.3
71,460 - SO_A0092 0.54 +0.0
71,460 - SO_A0092 0.54 +0.5

Or see this region's nucleotide sequence