Strain Fitness in Shewanella oneidensis MR-1 around SO_A0028

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0025 and SOA0026 are separated by 76 nucleotidesSOA0026 and SO_A0028 are separated by 70 nucleotidesSO_A0028 and SOA0029 overlap by 810 nucleotidesSOA0029 and SOA0030 are separated by 70 nucleotidesSOA0030 and SOA0031 are separated by 288 nucleotides SOA0024: SOA0024 - ISSod1, transposase OrfB (NCBI ptt file), at 19,523 to 20,332 SOA0024 SO_A0025: SO_A0025 - ISSod1, transposase OrfA (NCBI), at 19,523 to 20,682 _A0025 SOA0026: SOA0026 - site-specific recombinase, resolvase family (NCBI ptt file), at 20,759 to 21,067 SOA0026 SO_A0028: SO_A0028 - ISSod1, transposase OrfA (NCBI), at 21,138 to 22,297 _A0028 SOA0029: SOA0029 - ISSod1, transposase OrfB (NCBI ptt file), at 21,488 to 22,297 SOA0029 SOA0030: SOA0030 - hypothetical protein (NCBI ptt file), at 22,368 to 22,490 SOA0030 SOA0031: SOA0031 - partition protein, ParB family, putative (NCBI ptt file), at 22,779 to 24,653 SOA0031 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1 2at 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.735 kb on + strandat 20.745 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.750 kb on + strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.758 kb on - strandat 20.778 kb on - strandat 20.784 kb on + strandat 20.784 kb on + strandat 20.784 kb on + strandat 20.784 kb on + strandat 20.784 kb on + strandat 20.785 kb on + strandat 20.792 kb on - strand, within SOA0026at 20.793 kb on + strand, within SOA0026at 20.801 kb on - strand, within SOA0026at 20.808 kb on + strand, within SOA0026at 20.816 kb on - strand, within SOA0026at 20.819 kb on + strand, within SOA0026at 20.822 kb on + strand, within SOA0026at 20.827 kb on + strand, within SOA0026at 20.827 kb on + strand, within SOA0026at 20.835 kb on - strand, within SOA0026at 20.837 kb on + strand, within SOA0026at 20.837 kb on + strand, within SOA0026at 20.845 kb on - strand, within SOA0026at 20.845 kb on - strand, within SOA0026at 20.845 kb on - strand, within SOA0026at 20.872 kb on + strand, within SOA0026at 20.916 kb on - strand, within SOA0026at 20.970 kb on + strand, within SOA0026at 20.978 kb on - strand, within SOA0026at 20.978 kb on - strand, within SOA0026at 21.009 kb on + strand, within SOA0026at 21.017 kb on - strand, within SOA0026at 21.064 kb on + strandat 21.080 kb on - strandat 21.085 kb on - strandat 21.085 kb on - strandat 21.085 kb on - strandat 21.085 kb on - strandat 21.085 kb on - strandat 21.085 kb on - strandat 21.086 kb on - strandat 22.286 kb on + strandat 22.291 kb on + strandat 22.291 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.301 kb on + strandat 22.345 kb on + strandat 22.356 kb on + strandat 22.366 kb on + strandat 22.366 kb on + strandat 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.518 kb on - strandat 22.552 kb on + strandat 22.563 kb on + strandat 22.587 kb on - strandat 22.628 kb on + strandat 22.636 kb on - strandat 22.636 kb on - strandat 22.638 kb on + strandat 22.642 kb on + strandat 22.650 kb on - strandat 22.680 kb on - strandat 22.797 kb on - strandat 22.852 kb on - strandat 22.863 kb on - strandat 22.908 kb on - strandat 22.924 kb on - strandat 22.935 kb on + strandat 22.982 kb on - strand, within SOA0031at 23.021 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.095 kb on + strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.097 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.113 kb on + strand, within SOA0031at 23.121 kb on - strand, within SOA0031at 23.127 kb on - strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.140 kb on - strand, within SOA0031at 23.178 kb on - strand, within SOA0031at 23.189 kb on + strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.243 kb on + strand, within SOA0031at 23.261 kb on + strand, within SOA0031

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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20,735 + -0.3
20,735 + +1.1
20,735 + -0.4
20,735 + +0.4
20,735 + +0.0
20,735 + +0.7
20,735 + +0.2
20,735 + -0.1
20,735 + +1.8
20,735 + +0.9
20,745 + -0.3
20,750 + +0.7
20,750 + +2.3
20,750 + +0.8
20,750 + -0.2
20,750 + +0.5
20,750 + +0.5
20,750 + -0.1
20,750 + +0.1
20,750 + -0.3
20,750 + -0.5
20,750 + -0.1
20,750 + -0.6
20,750 + -0.9
20,750 + +0.2
20,750 + -0.5
20,758 - +0.3
20,758 - +0.5
20,758 - +0.7
20,758 - +0.3
20,758 - +0.1
20,758 - +0.4
20,758 - +0.6
20,758 - +0.1
20,758 - +0.4
20,758 - -0.1
20,758 - +0.1
20,778 - +0.0
20,784 + +0.1
20,784 + -1.4
20,784 + +0.7
20,784 + +0.2
20,784 + -0.3
20,785 + +0.1
20,792 - SOA0026 0.11 +0.4
20,793 + SOA0026 0.11 -0.1
20,801 - SOA0026 0.14 +0.8
20,808 + SOA0026 0.16 -0.8
20,816 - SOA0026 0.18 -0.2
20,819 + SOA0026 0.19 -0.9
20,822 + SOA0026 0.20 +0.3
20,827 + SOA0026 0.22 +0.7
20,827 + SOA0026 0.22 -0.0
20,835 - SOA0026 0.25 +0.2
20,837 + SOA0026 0.25 -0.3
20,837 + SOA0026 0.25 +0.1
20,845 - SOA0026 0.28 +0.9
20,845 - SOA0026 0.28 -0.1
20,845 - SOA0026 0.28 -1.1
20,872 + SOA0026 0.37 +0.5
20,916 - SOA0026 0.51 +0.1
20,970 + SOA0026 0.68 -0.0
20,978 - SOA0026 0.71 -0.2
20,978 - SOA0026 0.71 -0.0
21,009 + SOA0026 0.81 +0.2
21,017 - SOA0026 0.83 -0.2
21,064 + -0.0
21,080 - -0.8
21,085 - -1.0
21,085 - -0.2
21,085 - +0.3
21,085 - +0.5
21,085 - -0.3
21,085 - +0.4
21,086 - -0.0
22,286 + -1.5
22,291 + -0.4
22,291 + +0.1
22,296 + -0.9
22,296 + +0.1
22,296 + +0.2
22,301 + -0.4
22,345 + -0.1
22,356 + -0.4
22,366 + +0.0
22,366 + +0.3
22,381 + SOA0030 0.11 -0.2
22,381 + SOA0030 0.11 -0.2
22,381 + SOA0030 0.11 -0.9
22,381 + SOA0030 0.11 +0.4
22,381 + SOA0030 0.11 -0.0
22,389 - SOA0030 0.17 +0.5
22,389 - SOA0030 0.17 -0.3
22,389 - SOA0030 0.17 +0.2
22,389 - SOA0030 0.17 -0.1
22,389 - SOA0030 0.17 +0.2
22,389 - SOA0030 0.17 +0.5
22,518 - +0.4
22,552 + +0.3
22,563 + -0.2
22,587 - +0.1
22,628 + -0.0
22,636 - -0.3
22,636 - -0.1
22,638 + +0.1
22,642 + -0.2
22,650 - -1.1
22,680 - -0.5
22,797 - +0.1
22,852 - -0.2
22,863 - -0.1
22,908 - +0.6
22,924 - -1.0
22,935 + -0.4
22,982 - SOA0031 0.11 +0.5
23,021 + SOA0031 0.13 -0.1
23,088 + SOA0031 0.16 +0.6
23,088 + SOA0031 0.16 -0.1
23,088 + SOA0031 0.16 +2.3
23,088 + SOA0031 0.16 -0.4
23,088 + SOA0031 0.16 -1.5
23,088 + SOA0031 0.16 +0.5
23,088 + SOA0031 0.16 +0.3
23,088 + SOA0031 0.16 -0.3
23,088 + SOA0031 0.16 -0.6
23,088 + SOA0031 0.16 -0.7
23,088 + SOA0031 0.16 -0.2
23,088 + SOA0031 0.16 +0.2
23,089 + SOA0031 0.17 -0.0
23,089 + SOA0031 0.17 +0.2
23,095 + SOA0031 0.17 -0.0
23,096 - SOA0031 0.17 -0.9
23,096 - SOA0031 0.17 +0.7
23,096 - SOA0031 0.17 -0.1
23,096 - SOA0031 0.17 +0.1
23,097 - SOA0031 0.17 +0.7
23,098 - SOA0031 0.17 -1.4
23,098 - SOA0031 0.17 -0.1
23,100 + SOA0031 0.17 +0.2
23,100 + SOA0031 0.17 -0.6
23,100 + SOA0031 0.17 +0.2
23,100 + SOA0031 0.17 -0.0
23,100 + SOA0031 0.17 -0.1
23,100 + SOA0031 0.17 +1.7
23,100 + SOA0031 0.17 +0.3
23,108 - SOA0031 0.18 +0.3
23,108 - SOA0031 0.18 +0.3
23,113 + SOA0031 0.18 +0.1
23,121 - SOA0031 0.18 -0.3
23,127 - SOA0031 0.19 -0.9
23,132 + SOA0031 0.19 +0.6
23,132 + SOA0031 0.19 +0.2
23,140 - SOA0031 0.19 +0.2
23,178 - SOA0031 0.21 +0.1
23,189 + SOA0031 0.22 -0.4
23,236 - SOA0031 0.24 -0.6
23,236 - SOA0031 0.24 +0.0
23,243 + SOA0031 0.25 -0.1
23,261 + SOA0031 0.26 -0.4

Or see this region's nucleotide sequence