Strain Fitness in Shewanella oneidensis MR-1 around SO4745

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4743 and glmU are separated by 305 nucleotidesglmU and atpC are separated by 170 nucleotidesatpC and atpD are separated by 36 nucleotides SO4743: SO4743 - TonB-dependent receptor, putative (NCBI ptt file), at 4,954,248 to 4,956,320 SO4743 SO4745: glmU - UDP-N-acetylglucosamine pyrophosphorylase (NCBI ptt file), at 4,956,626 to 4,957,990 glmU SO4746: atpC - ATP synthase F1, epsilon subunit (NCBI ptt file), at 4,958,161 to 4,958,589 atpC SO4747: atpD - ATP synthase F1, beta subunit (NCBI ptt file), at 4,958,626 to 4,960,017 atpD Position (kb) 4956 4957 4958Strain fitness (log2 ratio) -1 0 1at 4955.629 kb on - strand, within SO4743at 4955.776 kb on - strand, within SO4743at 4955.994 kb on + strand, within SO4743at 4956.000 kb on - strand, within SO4743at 4956.047 kb on + strand, within SO4743at 4956.167 kb on + strandat 4956.167 kb on + strandat 4956.167 kb on + strandat 4956.167 kb on + strandat 4956.175 kb on - strandat 4956.181 kb on + strandat 4956.197 kb on - strandat 4956.214 kb on + strandat 4956.263 kb on + strandat 4956.350 kb on - strandat 4956.377 kb on + strandat 4956.383 kb on - strandat 4958.025 kb on - strandat 4958.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,955,629 - SO4743 0.67 -0.2
4,955,776 - SO4743 0.74 -0.8
4,955,994 + SO4743 0.84 -0.3
4,956,000 - SO4743 0.85 +1.7
4,956,047 + SO4743 0.87 +0.1
4,956,167 + +1.1
4,956,167 + -0.8
4,956,167 + -0.9
4,956,167 + +0.7
4,956,175 - +0.2
4,956,181 + -0.1
4,956,197 - +0.0
4,956,214 + -0.0
4,956,263 + -1.1
4,956,350 - -0.9
4,956,377 + +1.1
4,956,383 - +0.3
4,958,025 - -0.0
4,958,040 - -0.9

Or see this region's nucleotide sequence