Strain Fitness in Shewanella oneidensis MR-1 around SO4498

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4497 and SO4498 are separated by 82 nucleotides SO4497: SO4497 - ISSod5, transposase (NCBI ptt file), at 4,685,644 to 4,686,849 SO4497 SO4498: SO4498 - hypothetical protein (NCBI ptt file), at 4,686,932 to 4,687,303 SO4498 Position (kb) 4686 4687 4688Strain fitness (log2 ratio) -2 -1 0 1at 4686.952 kb on - strandat 4686.969 kb on + strandat 4688.175 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,686,952 - -2.5
4,686,969 + -0.1
4,688,175 + +0.3

Or see this region's nucleotide sequence