Strain Fitness in Shewanella oneidensis MR-1 around SO4436

Experiment: minimal media, aerobic, 0G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	minimal media, aerobic, 0G configuration
4,623,331	-				+0.1
4,623,336	-				-0.7
4,623,341	-				-0.1
4,623,358	+				+0.4
4,623,377	-				+0.4
4,623,389	+				-0.7
4,623,397	-				-0.0
4,623,412	-				-0.3
4,623,419	+				-0.3
4,623,426	+				-0.7
4,623,426	+				+1.5
4,623,426	+				-0.0
4,623,426	+				-0.5
4,623,426	+				+0.3
4,623,426	+				-1.7
4,623,426	+				-0.0
4,623,426	+				+0.5
4,623,426	+				+1.0
4,623,426	+				-0.5
4,623,426	+				+0.4
4,623,426	+				-0.5
4,623,426	+				+0.5
4,623,426	+				-0.1
4,623,426	+				-0.8
4,623,426	+				-0.6
4,623,426	+				-1.5
4,623,426	+				+0.4
4,623,426	+				+0.3
4,623,426	+				+0.9
4,623,426	+				-0.5
4,623,426	+				-0.1
4,623,434	-				-0.0
4,623,434	-				-0.2
4,623,434	-				-0.5
4,623,434	-				-0.6
4,623,434	-				-0.3
4,623,434	-				+1.1
4,623,434	-				-0.8
4,623,434	-				-1.8
4,623,434	-				+0.3
4,623,434	-				+0.1
4,623,434	-				+1.5
4,623,434	-				+1.5
4,623,434	-				-0.4
4,623,442	+				-0.3
4,623,456	-		SO4434	0.12	-0.1
4,623,468	+		SO4434	0.13	+0.4
4,623,562	-		SO4434	0.27	-0.0
4,623,574	+		SO4434	0.29	-0.5
4,623,574	+		SO4434	0.29	+0.5
4,623,579	+		SO4434	0.30	-1.3
4,623,579	+		SO4434	0.30	+0.3
4,623,579	+		SO4434	0.30	-1.3
4,623,579	+		SO4434	0.30	-0.7
4,623,580	+		SO4434	0.30	-0.2
4,623,580	+		SO4434	0.30	+0.3
4,623,580	+		SO4434	0.30	+0.7
4,623,580	+		SO4434	0.30	-0.9
4,623,581	+		SO4434	0.30	+0.4
4,623,581	+		SO4434	0.30	-0.6
4,623,581	+		SO4434	0.30	+0.6
4,623,581	+		SO4434	0.30	-0.4
4,623,581	+		SO4434	0.30	+0.2
4,623,581	+		SO4434	0.30	-0.0
4,623,581	+		SO4434	0.30	-0.4
4,623,582	-		SO4434	0.30	-0.6
4,623,587	-		SO4434	0.31	+0.2
4,623,587	-		SO4434	0.31	-1.5
4,623,587	-		SO4434	0.31	-0.1
4,623,587	-		SO4434	0.31	-0.3
4,623,589	+		SO4434	0.32	-1.9
4,623,589	-		SO4434	0.32	-0.8
4,623,589	-		SO4434	0.32	+0.5
4,623,589	-		SO4434	0.32	-0.1
4,623,589	-		SO4434	0.32	-0.3
4,623,589	-		SO4434	0.32	-0.3
4,623,589	-		SO4434	0.32	-0.1
4,623,595	+		SO4434	0.32	+0.1
4,623,595	+		SO4434	0.32	-0.5
4,623,595	+		SO4434	0.32	-0.7
4,623,597	+		SO4434	0.33	+0.7
4,623,604	+		SO4434	0.34	+0.2
4,623,604	+		SO4434	0.34	-0.5
4,623,604	+		SO4434	0.34	-0.7
4,623,604	+		SO4434	0.34	+0.3
4,623,604	+		SO4434	0.34	-1.0
4,623,604	+		SO4434	0.34	+0.5
4,623,604	+		SO4434	0.34	-2.1
4,623,609	+		SO4434	0.35	-1.5
4,623,611	+		SO4434	0.35	+2.3
4,623,611	+		SO4434	0.35	-1.7
4,623,611	+		SO4434	0.35	+0.7
4,623,612	-		SO4434	0.35	-0.3
4,623,617	-		SO4434	0.36	+1.7
4,623,617	-		SO4434	0.36	+0.4
4,623,619	-		SO4434	0.36	+0.3
4,623,623	+		SO4434	0.37	-0.5
4,623,629	+		SO4434	0.38	+1.5
4,623,636	-		SO4434	0.39	-0.4
4,623,651	+		SO4434	0.41	+0.3
4,623,651	+		SO4434	0.41	-0.9
4,623,651	+		SO4434	0.41	-0.8
4,623,651	+		SO4434	0.41	+0.3
4,623,651	+		SO4434	0.41	+0.0
4,623,651	+		SO4434	0.41	+0.3
4,623,651	+		SO4434	0.41	+0.1
4,623,651	+		SO4434	0.41	+1.1
4,623,657	+		SO4434	0.42	-0.8
4,623,659	-		SO4434	0.42	-0.2
4,623,659	-		SO4434	0.42	-1.5
4,623,659	-		SO4434	0.42	+0.1
4,623,659	-		SO4434	0.42	-0.4
4,623,659	-		SO4434	0.42	-0.5
4,623,659	-		SO4434	0.42	+0.5
4,623,661	-		SO4434	0.42	-0.0
4,623,667	-		SO4434	0.43	-1.2
4,623,703	+		SO4434	0.49	-0.6
4,623,710	+		SO4434	0.50	+0.4
4,623,710	+		SO4434	0.50	-0.3
4,623,710	+		SO4434	0.50	-0.3
4,623,710	+		SO4434	0.50	+2.7
4,623,711	+		SO4434	0.50	-0.3
4,623,711	-		SO4434	0.50	-1.1
4,623,714	-		SO4434	0.50	-0.1
4,623,718	-		SO4434	0.51	-1.3
4,623,718	-		SO4434	0.51	+0.3
4,623,718	-		SO4434	0.51	+0.4
4,623,718	-		SO4434	0.51	-0.1
4,623,718	-		SO4434	0.51	+0.8
4,623,718	-		SO4434	0.51	-0.6
4,623,722	+		SO4434	0.52	+0.2
4,623,722	+		SO4434	0.52	-0.5
4,623,723	+		SO4434	0.52	-1.1
4,623,723	+		SO4434	0.52	-0.2
4,623,723	+		SO4434	0.52	-0.5
4,623,723	+		SO4434	0.52	+0.1
4,623,723	+		SO4434	0.52	+2.1
4,623,723	+		SO4434	0.52	-0.6
4,623,723	+		SO4434	0.52	+0.4
4,623,723	+		SO4434	0.52	-0.3
4,623,723	+		SO4434	0.52	+1.1
4,623,723	+		SO4434	0.52	+0.3
4,623,723	+		SO4434	0.52	+0.2
4,623,723	+		SO4434	0.52	-0.3
4,623,723	+		SO4434	0.52	+0.7
4,623,723	+		SO4434	0.52	+1.2
4,623,723	+		SO4434	0.52	+0.1
4,623,723	+		SO4434	0.52	+0.7
4,623,723	+		SO4434	0.52	-0.7
4,623,723	+		SO4434	0.52	+0.6
4,623,723	+		SO4434	0.52	-1.8
4,623,723	+		SO4434	0.52	+0.3
4,623,723	+		SO4434	0.52	-2.7
4,623,723	+		SO4434	0.52	-0.4
4,623,723	+		SO4434	0.52	+1.1
4,623,723	+		SO4434	0.52	-0.4
4,623,723	+		SO4434	0.52	-0.5
4,623,728	+		SO4434	0.52	-2.5
4,623,731	-		SO4434	0.53	-0.1
4,623,731	-		SO4434	0.53	-0.1
4,623,731	-		SO4434	0.53	+0.5
4,623,731	-		SO4434	0.53	-0.3
4,623,731	-		SO4434	0.53	-0.0
4,623,731	-		SO4434	0.53	+0.3
4,623,731	-		SO4434	0.53	+0.1
4,623,731	-		SO4434	0.53	-0.4
4,623,731	-		SO4434	0.53	-0.3
4,623,731	-		SO4434	0.53	-0.6
4,623,731	-		SO4434	0.53	-1.2
4,623,731	-		SO4434	0.53	-0.1
4,623,731	-		SO4434	0.53	-0.3
4,623,731	-		SO4434	0.53	+1.1
4,623,731	-		SO4434	0.53	-0.8
4,623,731	-		SO4434	0.53	+0.3
4,623,731	-		SO4434	0.53	+0.3
4,623,731	-		SO4434	0.53	+1.0
4,623,731	-		SO4434	0.53	+0.3
4,623,731	-		SO4434	0.53	-0.0
4,623,731	-		SO4434	0.53	-0.1
4,623,731	-		SO4434	0.53	+0.7
4,623,731	-		SO4434	0.53	-1.3
4,623,751	-		SO4434	0.56	+0.1
4,623,752	-		SO4434	0.56	-0.5
4,623,755	+		SO4434	0.56	-0.4
4,623,755	+		SO4434	0.56	-0.3
4,623,755	+		SO4434	0.56	-0.0
4,623,755	+		SO4434	0.56	-0.1
4,623,755	+		SO4434	0.56	+0.5
4,623,763	-		SO4434	0.58	+0.2
4,623,763	-		SO4434	0.58	-0.3
4,623,763	-		SO4434	0.58	-0.1
4,623,763	-		SO4434	0.58	+0.6
4,623,763	-		SO4434	0.58	+0.1
4,623,763	-		SO4434	0.58	+0.3
4,623,763	-		SO4434	0.58	+0.2
4,623,763	-		SO4434	0.58	-0.5
4,623,763	-		SO4434	0.58	-0.9
4,623,765	+		SO4434	0.58	-0.5
4,623,765	+		SO4434	0.58	-0.3
4,623,765	+		SO4434	0.58	+0.7
4,623,773	-		SO4434	0.59	+0.0
4,623,773	-		SO4434	0.59	+0.2
4,623,825	+		SO4434	0.67	-0.2
4,623,825	+		SO4434	0.67	+0.0
4,623,825	+		SO4434	0.67	-1.1
4,623,826	+		SO4434	0.67	+0.1
4,623,832	+		SO4434	0.68	+0.2
4,623,840	-		SO4434	0.69	-1.3
4,623,840	-		SO4434	0.69	-0.2
4,623,840	-		SO4434	0.69	-0.8
4,623,856	+		SO4434	0.72	-0.1
4,623,856	+		SO4434	0.72	+0.7
4,623,857	+		SO4434	0.72	-1.3
4,623,857	+		SO4434	0.72	-0.4
4,623,857	+		SO4434	0.72	+2.1
4,623,857	+		SO4434	0.72	+0.1
4,623,857	+		SO4434	0.72	+0.7
4,623,857	+		SO4434	0.72	-0.5
4,623,864	-		SO4434	0.73	-0.4
4,623,864	-		SO4434	0.73	-0.3
4,623,864	-		SO4434	0.73	+2.1
4,623,865	-		SO4434	0.73	+0.5
4,623,865	-		SO4434	0.73	-0.0
4,623,865	-		SO4434	0.73	-0.1
4,623,865	-		SO4434	0.73	+0.6
4,623,865	-		SO4434	0.73	-0.2
4,623,865	-		SO4434	0.73	-0.1
4,623,866	+		SO4434	0.73	-0.0
4,623,866	+		SO4434	0.73	+0.7
4,623,866	+		SO4434	0.73	-0.7
4,623,866	+		SO4434	0.73	-0.1
4,623,866	+		SO4434	0.73	-0.2
4,623,866	+		SO4434	0.73	-0.3
4,623,866	+		SO4434	0.73	-0.5
4,623,866	+		SO4434	0.73	+1.1
4,623,866	+		SO4434	0.73	+1.4
4,623,866	+		SO4434	0.73	+0.3
4,623,866	+		SO4434	0.73	+0.5
4,623,866	+		SO4434	0.73	+2.1
4,623,867	+		SO4434	0.73	+0.1
4,623,868	+		SO4434	0.73	+0.1
4,623,869	-		SO4434	0.74	-0.5
4,623,874	-		SO4434	0.74	-0.1
4,623,874	-		SO4434	0.74	+0.4
4,623,874	-		SO4434	0.74	-0.1
4,623,874	-		SO4434	0.74	-0.5
4,623,874	-		SO4434	0.74	-0.7
4,623,874	-		SO4434	0.74	+1.1
4,623,874	-		SO4434	0.74	-0.7
4,623,895	+		SO4434	0.77	-0.4
4,623,895	+		SO4434	0.77	-2.6
4,623,982	+				-0.7
4,623,982	+				+0.2
4,623,982	+				-0.2
4,623,982	+				+0.1
4,623,982	+				+0.4
4,623,984	+				+0.4
4,623,984	+				+0.3
4,623,984	+				-0.0
4,623,984	+				+0.2
4,623,990	-				-0.8
4,623,990	-				+0.3
4,623,990	-				-0.5
4,623,990	-				-0.5
4,623,990	-				-1.0
4,623,990	-				-0.9
4,623,992	-				+0.1
4,623,998	+				+0.1
4,623,998	+				-0.1
4,624,006	+				-1.1
4,624,006	+				+0.4
4,624,006	+				+0.2
4,624,006	+				+0.4
4,624,006	+				-0.1
4,624,014	-				-0.4
4,624,014	-				-0.2
4,624,015	-				-0.3
4,624,015	-				+0.4
4,624,042	-				-0.8
4,624,059	+				-0.3
4,624,069	+				-0.3
4,624,069	+				+1.0
4,624,077	-				+0.5
4,624,092	-				+0.3
4,624,097	+				-0.3
4,624,116	+				-0.3
4,624,116	+				-0.7
4,624,116	+				-0.3
4,624,116	+				+0.0
4,624,116	+				+0.7
4,624,116	+				+0.2
4,624,116	+				-1.0
4,624,116	+				-0.1
4,624,116	+				-0.1
4,624,116	+				+0.1
4,624,116	+				-0.1
4,624,116	+				+1.1
4,624,116	+				+0.2
4,624,116	+				+0.7
4,624,116	+				-1.7
4,624,116	+				+0.1
4,624,116	+				+0.1
4,624,116	+				+1.5
4,624,116	+				+0.8
4,624,116	+				-0.5
4,624,116	+				-0.1
4,624,116	+				-0.0
4,624,116	+				+0.7
4,624,116	+				+0.4
4,624,116	+				+0.1
4,624,116	+				+0.0
4,624,116	+				+0.3
4,624,116	+				-0.7
4,624,116	+				+0.3
4,624,116	+				-0.2
4,624,116	+				+0.1
4,624,116	+				+0.3
4,624,116	+				+0.5
4,624,116	+				+0.2
4,624,116	+				+0.1
4,624,116	+				-0.0
4,624,116	+				+0.1
4,624,116	+				+0.0
4,624,116	+				+0.6
4,624,116	+				-1.8
4,624,116	+				+0.6
4,624,116	+				-0.1
4,624,116	+				+0.1
4,624,116	+				-0.6
4,624,124	-				+0.4
4,624,124	-				-0.3
4,624,124	-				+1.1
4,624,124	-				+0.2
4,624,124	-				+0.1
4,624,124	-				+0.2
4,624,124	-				+0.7
4,624,124	-				-0.2
4,624,124	-				+0.0
4,624,124	-				-0.3
4,624,124	-				+0.2
4,624,124	-				-0.5
4,624,124	-				-0.5
4,624,124	-				-0.0
4,624,124	-				-1.2
4,624,124	-				-0.2
4,624,124	-				+1.0
4,624,124	-				+2.1
4,624,124	-				+0.5
4,624,124	-				-0.1
4,624,124	-				-0.3
4,624,124	-				+0.2
4,624,124	-				-0.1
4,624,124	-				-0.2
4,624,124	-				-0.6
4,624,124	-				+0.2
4,624,124	-				+0.2
4,624,124	-				-0.1
4,624,124	-				+0.0
4,624,124	-				+0.3
4,624,124	-				-0.2
4,624,124	-				+2.3
4,624,124	-				-0.8
4,624,124	-				-0.3
4,624,124	-				+0.6
4,624,124	-				-1.9
4,624,124	-				-0.2
4,624,124	-				-0.7
4,624,124	-				-1.3
4,624,124	-				+0.9
4,624,136	-				-0.4
4,624,161	+		SO4435	0.11	-0.3
4,624,161	+		SO4435	0.11	+1.0
4,624,161	+		SO4435	0.11	+0.6
4,624,161	+		SO4435	0.11	-0.2
4,624,161	+		SO4435	0.11	+0.3
4,624,169	-		SO4435	0.14	-0.3
4,624,169	-		SO4435	0.14	+0.5
4,624,169	-		SO4435	0.14	+0.1
4,624,169	-		SO4435	0.14	-1.2
4,624,169	-		SO4435	0.14	-0.2
4,624,169	-		SO4435	0.14	+0.9
4,624,172	+		SO4435	0.15	-0.6
4,624,177	+		SO4435	0.17	-0.4
4,624,177	+		SO4435	0.17	+1.1
4,624,177	+		SO4435	0.17	-0.2
4,624,180	-		SO4435	0.18	+0.5
4,624,180	-		SO4435	0.18	+0.1
4,624,180	-		SO4435	0.18	+0.5
4,624,180	-		SO4435	0.18	-1.0
4,624,180	-		SO4435	0.18	-0.0
4,624,182	+		SO4435	0.19	+1.1
4,624,187	-		SO4435	0.21	+1.1
4,624,190	+		SO4435	0.22	-0.8
4,624,198	-		SO4435	0.25	-0.1
4,624,206	-		SO4435	0.28	+0.2
4,624,206	-		SO4435	0.28	-0.3
4,624,213	-		SO4435	0.31	+0.4
4,624,213	-		SO4435	0.31	+0.5
4,624,217	-		SO4435	0.32	+1.1
4,624,217	-		SO4435	0.32	-0.6
4,624,218	+		SO4435	0.33	+0.1
4,624,231	-		SO4435	0.38	-0.7
4,624,255	+		SO4435	0.47	-0.3
4,624,262	+		SO4435	0.49	-1.6
4,624,289	-		SO4435	0.60	-0.3
4,624,297	-		SO4435	0.63	-0.4
4,624,304	-		SO4435	0.66	-0.7