Strain Fitness in Shewanella oneidensis MR-1 around SO4432

Experiment: minimal media, aerobic, 0G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	minimal media, aerobic, 0G configuration
4,620,276	+		SO4429	0.79	+0.1
4,620,323	-		SO4429	0.88	+0.5
4,620,336	-				-0.4
4,620,383	-				-0.7
4,620,420	-				-0.6
4,620,437	-				+0.3
4,620,454	+				+0.9
4,620,481	-				-1.5
4,620,509	-				-1.4
4,620,510	-				+0.4
4,620,522	+				+0.3
4,620,541	-				+0.8
4,620,574	+				-1.7
4,620,574	+				+0.0
4,620,574	+				+0.0
4,620,574	+				+0.3
4,620,582	-				-0.8
4,620,582	-				+1.3
4,620,632	+				-1.7
4,620,673	+				-0.8
4,620,834	-				-0.6
4,620,907	-		SO4430	0.16	+0.1
4,620,929	-		SO4430	0.30	+0.9
4,620,936	-		SO4430	0.34	+0.1
4,620,936	-		SO4430	0.34	+0.0
4,620,943	+		SO4430	0.38	-0.5
4,620,951	-		SO4430	0.43	-0.8
4,621,015	+		SO4430	0.82	-0.2
4,621,093	-				-0.4
4,621,111	+		SO4431	0.13	+0.3
4,621,111	+		SO4431	0.13	-0.1
4,621,111	+		SO4431	0.13	-0.2
4,621,111	+		SO4431	0.13	+0.3
4,621,111	+		SO4431	0.13	-0.4
4,621,119	-		SO4431	0.17	-0.8
4,621,119	-		SO4431	0.17	+0.4
4,621,130	-		SO4431	0.22	+0.6
4,621,130	-		SO4431	0.22	-0.9
4,621,170	-		SO4431	0.40	-0.5
4,621,172	+		SO4431	0.41	-0.2
4,621,182	+		SO4431	0.46	-0.5
4,621,190	-		SO4431	0.50	-0.4
4,621,190	-		SO4431	0.50	-0.5
4,622,639	+		SO4433	0.12	-1.3
4,622,656	+		SO4433	0.15	-0.6
4,622,662	-		SO4433	0.16	-0.3
4,622,714	+		SO4433	0.24	-0.3
4,622,722	-		SO4433	0.26	-1.3
4,622,722	-		SO4433	0.26	+0.1
4,622,736	-		SO4433	0.28	-0.9
4,622,760	+		SO4433	0.32	+0.2
4,622,784	+		SO4433	0.36	-0.7
4,622,790	-		SO4433	0.37	-0.9
4,622,790	-		SO4433	0.37	-0.4
4,622,791	-		SO4433	0.37	-0.3
4,622,792	-		SO4433	0.37	-0.5
4,622,819	-		SO4433	0.42	-2.3
4,622,822	-		SO4433	0.42	+0.6
4,622,824	-		SO4433	0.42	-0.1
4,622,824	-		SO4433	0.42	-0.1
4,622,827	-		SO4433	0.43	+0.2
4,622,868	+		SO4433	0.50	-2.5
4,622,868	-		SO4433	0.50	+0.7
4,622,868	-		SO4433	0.50	-0.8
4,622,872	-		SO4433	0.50	-0.3
4,622,874	-		SO4433	0.51	+0.4
4,622,880	-		SO4433	0.52	+0.0
4,622,895	+		SO4433	0.54	-0.1
4,622,895	+		SO4433	0.54	+0.3
4,622,897	+		SO4433	0.55	+0.1
4,622,898	-		SO4433	0.55	-0.9
4,622,901	+		SO4433	0.55	-0.1
4,622,909	-		SO4433	0.57	-0.0
4,622,915	-		SO4433	0.58	+0.2
4,622,915	-		SO4433	0.58	+1.7
4,622,920	+		SO4433	0.58	-0.7
4,622,925	+		SO4433	0.59	-0.3
4,622,925	+		SO4433	0.59	+0.1
4,622,925	+		SO4433	0.59	-0.0
4,622,931	+		SO4433	0.60	-0.5
4,622,933	-		SO4433	0.61	-0.0
4,622,951	+		SO4433	0.64	+0.6
4,622,955	+		SO4433	0.64	+1.1
4,622,955	+		SO4433	0.64	+0.6
4,622,967	-		SO4433	0.66	+0.9
4,623,010	+		SO4433	0.73	-0.1
4,623,015	-		SO4433	0.74	-0.3
4,623,015	-		SO4433	0.74	+0.1
4,623,016	-		SO4433	0.74	-0.0
4,623,024	-		SO4433	0.76	+1.1
4,623,029	-		SO4433	0.76	+0.6
4,623,029	-		SO4433	0.76	-0.2
4,623,031	+		SO4433	0.77	-0.7
4,623,031	+		SO4433	0.77	+0.5
4,623,031	+		SO4433	0.77	+1.1
4,623,031	+		SO4433	0.77	+0.3
4,623,031	+		SO4433	0.77	-0.6
4,623,031	+		SO4433	0.77	-0.6
4,623,031	+		SO4433	0.77	-0.5
4,623,031	+		SO4433	0.77	+0.7
4,623,031	+		SO4433	0.77	-0.6
4,623,031	+		SO4433	0.77	+0.4
4,623,031	+		SO4433	0.77	+0.4
4,623,031	+		SO4433	0.77	+0.3
4,623,031	+		SO4433	0.77	+0.7
4,623,031	+		SO4433	0.77	+0.6
4,623,031	+		SO4433	0.77	-0.5
4,623,031	+		SO4433	0.77	-0.6
4,623,031	+		SO4433	0.77	-1.5
4,623,031	+		SO4433	0.77	+0.0
4,623,031	+		SO4433	0.77	+0.3
4,623,031	+		SO4433	0.77	+0.5
4,623,032	-		SO4433	0.77	-0.1
4,623,037	-		SO4433	0.78	+0.2
4,623,039	+		SO4433	0.78	+0.8
4,623,039	+		SO4433	0.78	-0.1
4,623,039	+		SO4433	0.78	+0.5
4,623,039	-		SO4433	0.78	+1.1
4,623,039	-		SO4433	0.78	-0.6
4,623,039	-		SO4433	0.78	+0.4
4,623,039	-		SO4433	0.78	-0.5
4,623,039	-		SO4433	0.78	-0.5
4,623,039	-		SO4433	0.78	+0.8
4,623,039	-		SO4433	0.78	-0.5
4,623,039	-		SO4433	0.78	-0.8
4,623,039	-		SO4433	0.78	-0.3
4,623,039	-		SO4433	0.78	-0.3
4,623,039	-		SO4433	0.78	-0.2
4,623,039	-		SO4433	0.78	+0.2
4,623,039	-		SO4433	0.78	-0.6
4,623,039	-		SO4433	0.78	+0.2
4,623,039	-		SO4433	0.78	-0.9
4,623,039	-		SO4433	0.78	+0.0
4,623,039	-		SO4433	0.78	-0.3
4,623,039	-		SO4433	0.78	+0.4
4,623,039	-		SO4433	0.78	-0.0
4,623,039	-		SO4433	0.78	-0.5
4,623,039	-		SO4433	0.78	+1.5
4,623,039	-		SO4433	0.78	+0.1
4,623,039	-		SO4433	0.78	+0.7
4,623,039	-		SO4433	0.78	-1.5
4,623,047	-		SO4433	0.79	-0.3
4,623,047	-		SO4433	0.79	-0.1
4,623,047	-		SO4433	0.79	+0.4
4,623,047	-		SO4433	0.79	+0.6
4,623,047	-		SO4433	0.79	-0.1
4,623,050	+		SO4433	0.80	-0.4
4,623,050	+		SO4433	0.80	+0.7
4,623,050	+		SO4433	0.80	-0.9
4,623,050	-		SO4433	0.80	-0.8
4,623,057	-		SO4433	0.81	-0.6
4,623,058	+		SO4433	0.81	+0.3
4,623,058	-		SO4433	0.81	-0.3
4,623,058	-		SO4433	0.81	-0.3
4,623,058	-		SO4433	0.81	-0.4
4,623,065	-		SO4433	0.82	+0.2
4,623,066	+		SO4433	0.83	-0.4
4,623,090	-		SO4433	0.87	+0.3
4,623,099	+		SO4433	0.88	-0.0
4,623,100	+		SO4433	0.88	-0.1
4,623,100	+		SO4433	0.88	-0.3
4,623,100	+		SO4433	0.88	-0.2
4,623,100	+		SO4433	0.88	+0.2
4,623,107	-		SO4433	0.89	+0.7
4,623,108	-		SO4433	0.90	+0.2
4,623,108	-		SO4433	0.90	-0.2
4,623,108	-		SO4433	0.90	-0.3
4,623,109	+		SO4433	0.90	+0.5
4,623,117	+				+1.1
4,623,117	-				-0.6
4,623,118	-				+0.5
4,623,123	-				+0.6
4,623,124	-				+0.4
4,623,124	-				+1.7
4,623,126	+				+0.3
4,623,126	+				+0.2
4,623,134	-				-1.0
4,623,161	-				-0.2
4,623,167	+				-0.7
4,623,167	+				-1.7
4,623,167	+				-0.2
4,623,167	+				+0.5
4,623,172	+				+0.4
4,623,175	-				+0.4
4,623,175	-				-0.0
4,623,175	-				+0.2
4,623,180	-				-0.1
4,623,225	+				+0.8
4,623,231	-				+0.7
4,623,232	-				-0.5
4,623,234	+				-0.3
4,623,257	-				-0.6
4,623,267	+				+0.1
4,623,267	+				+0.5
4,623,267	+				+2.7
4,623,268	+				+0.1
4,623,272	+				+0.2
4,623,272	+				-0.4
4,623,275	-				+1.5
4,623,278	-				+0.3
4,623,280	-				-0.7
4,623,280	-				+0.3
4,623,280	-				-0.6
4,623,283	+				-0.3
4,623,283	+				-0.3
4,623,285	+				-0.1
4,623,323	+				-0.3
4,623,331	-				+0.1
4,623,336	-				-0.7
4,623,341	-				-0.1
4,623,358	+				+0.4
4,623,377	-				+0.4
4,623,389	+				-0.7
4,623,397	-				-0.0
4,623,412	-				-0.3
4,623,419	+				-0.3
4,623,426	+				-0.7
4,623,426	+				+1.5
4,623,426	+				-0.0
4,623,426	+				-0.5
4,623,426	+				+0.3
4,623,426	+				-1.7
4,623,426	+				-0.0
4,623,426	+				+0.5
4,623,426	+				+1.0
4,623,426	+				-0.5
4,623,426	+				+0.4
4,623,426	+				-0.5
4,623,426	+				+0.5
4,623,426	+				-0.1
4,623,426	+				-0.8
4,623,426	+				-0.6
4,623,426	+				-1.5
4,623,426	+				+0.4
4,623,426	+				+0.3
4,623,426	+				+0.9
4,623,426	+				-0.5
4,623,426	+				-0.1
4,623,434	-				-0.0
4,623,434	-				-0.2
4,623,434	-				-0.5
4,623,434	-				-0.6
4,623,434	-				-0.3
4,623,434	-				+1.1
4,623,434	-				-0.8
4,623,434	-				-1.8
4,623,434	-				+0.3
4,623,434	-				+0.1
4,623,434	-				+1.5
4,623,434	-				+1.5
4,623,434	-				-0.4
4,623,442	+				-0.3
4,623,456	-		SO4434	0.12	-0.1
4,623,468	+		SO4434	0.13	+0.4