Strain Fitness in Shewanella oneidensis MR-1 around SO4278

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4277 and SO4278 are separated by 59 nucleotidesSO4278 and SO4279 are separated by 253 nucleotides SO4277: SO4277 - ISSod1, transposase OrfB (NCBI ptt file), at 4,455,979 to 4,456,788 SO4277 SO4278: SO4278 - ISSod1, transposase OrfA (NCBI ptt file), at 4,456,848 to 4,457,138 SO4278 SO4279: SO4279 - membrane protein, putative (NCBI ptt file), at 4,457,392 to 4,458,369 SO4279 Position (kb) 4456 4457 4458Strain fitness (log2 ratio) -2 -1 0 1at 4455.849 kb on + strandat 4455.872 kb on - strandat 4455.927 kb on + strandat 4455.933 kb on - strandat 4455.936 kb on - strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.958 kb on + strandat 4455.966 kb on - strandat 4455.966 kb on - strandat 4455.966 kb on - strandat 4455.966 kb on - strandat 4455.966 kb on - strandat 4455.966 kb on - strandat 4455.980 kb on - strandat 4455.980 kb on - strandat 4455.990 kb on - strandat 4457.167 kb on + strandat 4457.190 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.191 kb on + strandat 4457.196 kb on + strandat 4457.201 kb on + strandat 4457.201 kb on + strandat 4457.223 kb on - strandat 4457.225 kb on - strandat 4457.260 kb on - strandat 4457.271 kb on + strandat 4457.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,455,849 + -0.3
4,455,872 - +0.9
4,455,927 + -1.1
4,455,933 - +0.5
4,455,936 - -1.1
4,455,958 + +0.1
4,455,958 + -0.7
4,455,958 + +0.4
4,455,958 + -0.4
4,455,958 + +0.2
4,455,958 + -0.6
4,455,958 + -0.5
4,455,958 + -1.4
4,455,958 + -0.2
4,455,966 - -1.5
4,455,966 - +0.1
4,455,966 - +0.2
4,455,966 - +1.1
4,455,966 - -1.6
4,455,966 - -0.3
4,455,980 - +0.0
4,455,980 - -0.0
4,455,990 - -0.8
4,457,167 + -0.2
4,457,190 + +0.1
4,457,191 + +0.1
4,457,191 + -0.2
4,457,191 + +0.3
4,457,191 + +0.3
4,457,191 + -1.2
4,457,191 + -0.1
4,457,191 + -0.1
4,457,191 + -0.7
4,457,191 + +0.1
4,457,191 + +0.1
4,457,191 + +0.5
4,457,191 + +0.5
4,457,191 + +0.6
4,457,191 + -0.0
4,457,191 + -0.3
4,457,191 + -0.1
4,457,191 + +0.5
4,457,191 + -0.2
4,457,191 + +0.4
4,457,191 + -0.5
4,457,191 + -2.1
4,457,191 + +0.1
4,457,196 + -0.2
4,457,201 + +0.1
4,457,201 + +1.1
4,457,223 - +0.5
4,457,225 - -0.7
4,457,260 - -0.3
4,457,271 + -0.6
4,457,279 - -2.0

Or see this region's nucleotide sequence