Strain Fitness in Shewanella oneidensis MR-1 around SO4219

Experiment: minimal media, aerobic, 0G configuration

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmurC and murG are separated by 2 nucleotidesmurG and ftsW overlap by 1 nucleotides SO4218: murC - UDP-N-acetylmuramate--alanine ligase (NCBI ptt file), at 4,391,681 to 4,393,147 murC SO4219: murG - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (NCBI ptt file), at 4,393,150 to 4,394,238 murG SO4220: ftsW - cell division protein FtsW (NCBI ptt file), at 4,394,238 to 4,395,449 ftsW Position (kb) 4393 4394 4395Strain fitness (log2 ratio) -1 0 1at 4394.258 kb on - strandat 4394.272 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
remove
4,394,258 - -0.0
4,394,272 - +1.2

Or see this region's nucleotide sequence