Strain Fitness in Shewanella oneidensis MR-1 around SO4123

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpriA and argS are separated by 111 nucleotidesargS and SO4124 are separated by 3 nucleotides SO4122: priA - primosomal protein N' (NCBI ptt file), at 4,280,594 to 4,282,807 priA SO4123: argS - arginyl-tRNA synthetase (NCBI ptt file), at 4,282,919 to 4,284,664 argS SO4124: SO4124 - cell division protein FtsN, putative (NCBI ptt file), at 4,284,668 to 4,285,363 SO4124 Position (kb) 4282 4283 4284 4285Strain fitness (log2 ratio) -1 0 1at 4285.389 kb on + strandat 4285.397 kb on - strandat 4285.397 kb on - strandat 4285.575 kb on + strandat 4285.638 kb on + strandat 4285.664 kb on + strandat 4285.664 kb on + strandat 4285.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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4,285,389 + -0.5
4,285,397 - +0.0
4,285,397 - +0.4
4,285,575 + -0.3
4,285,638 + +1.5
4,285,664 + -0.3
4,285,664 + -0.3
4,285,664 + +0.3

Or see this region's nucleotide sequence