Strain Fitness in Shewanella oneidensis MR-1 around SO2777

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntacpP and fabG-1 are separated by 163 nucleotidesfabG-1 and fabD are separated by 9 nucleotidesfabD and fabH-1 are separated by 104 nucleotides SO2775: acpP - acyl carrier protein (NCBI ptt file), at 2,897,778 to 2,898,011 acpP SO2776: fabG-1 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file), at 2,898,175 to 2,898,921 fabG-1 SO2777: fabD - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 2,898,931 to 2,899,857 fabD SO2778: fabH-1 - 3-oxoacyl-(acyl-carrier-protein) synthase III (NCBI ptt file), at 2,899,962 to 2,900,921 fabH-1 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -1 0 1at 2898.140 kb on + strandat 2898.180 kb on - strandat 2898.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,898,140 + +0.8
2,898,180 - -0.0
2,898,180 - +0.6

Or see this region's nucleotide sequence