Strain Fitness in Shewanella oneidensis MR-1 around SO2750

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolA and tolR are separated by 0 nucleotidestolR and SO2751 overlap by 1 nucleotidesSO2751 and SO2752 overlap by 11 nucleotides SO2749: tolA - tolA protein (NCBI ptt file), at 2,870,529 to 2,871,566 tolA SO2750: tolR - tolr protein (NCBI ptt file), at 2,871,567 to 2,872,001 tolR SO2751: SO2751 - MotA/TolQ/ExbB proton channel family protein (NCBI ptt file), at 2,872,001 to 2,872,687 SO2751 SO2752: SO2752 - conserved hypothetical protein TIGR00051 (NCBI ptt file), at 2,872,677 to 2,873,078 SO2752 Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -1 0 1at 2872.750 kb on - strand, within SO2752at 2872.755 kb on - strand, within SO2752at 2872.755 kb on - strand, within SO2752at 2872.763 kb on - strand, within SO2752at 2872.765 kb on - strand, within SO2752at 2872.768 kb on - strand, within SO2752at 2872.788 kb on - strand, within SO2752at 2872.836 kb on - strand, within SO2752at 2872.956 kb on + strand, within SO2752at 2872.978 kb on + strand, within SO2752

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,872,750 - SO2752 0.18 +0.8
2,872,755 - SO2752 0.19 +0.1
2,872,755 - SO2752 0.19 -0.2
2,872,763 - SO2752 0.21 -0.1
2,872,765 - SO2752 0.22 +0.8
2,872,768 - SO2752 0.23 +0.1
2,872,788 - SO2752 0.28 +0.3
2,872,836 - SO2752 0.40 +0.5
2,872,956 + SO2752 0.69 +0.1
2,872,978 + SO2752 0.75 -1.2

Or see this region's nucleotide sequence