Strain Fitness in Shewanella oneidensis MR-1 around SO2692

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2690 and SO2691 overlap by 4 nucleotidesSO2691 and SO2692 are separated by 16 nucleotidesSO2692 and SO2693 are separated by 2 nucleotides SO2690: SO2690 - prophage MuSo2, virion morphogenesis protein, putative (NCBI ptt file), at 2,810,636 to 2,811,133 SO2690 SO2691: SO2691 - hypothetical protein (NCBI ptt file), at 2,811,130 to 2,811,720 SO2691 SO2692: SO2692 - conserved hypothetical protein (NCBI ptt file), at 2,811,737 to 2,811,901 SO2692 SO2693: SO2693 - prophage MuSo2, tail sheath protein, putative (NCBI ptt file), at 2,811,904 to 2,813,385 SO2693 Position (kb) 2811 2812Strain fitness (log2 ratio) -2 -1 0 1 2at 2810.767 kb on + strand, within SO2690at 2810.784 kb on + strand, within SO2690at 2810.817 kb on - strand, within SO2690at 2810.840 kb on + strand, within SO2690at 2810.887 kb on + strand, within SO2690at 2810.887 kb on + strand, within SO2690at 2810.895 kb on - strand, within SO2690at 2810.895 kb on - strand, within SO2690at 2810.957 kb on + strand, within SO2690at 2810.975 kb on + strand, within SO2690at 2810.975 kb on + strand, within SO2690at 2810.983 kb on - strand, within SO2690at 2810.983 kb on - strand, within SO2690at 2811.086 kb on + strandat 2811.105 kb on - strandat 2811.132 kb on + strandat 2811.152 kb on + strandat 2811.172 kb on - strandat 2811.214 kb on + strand, within SO2691at 2811.356 kb on - strand, within SO2691at 2811.480 kb on + strand, within SO2691at 2811.502 kb on + strand, within SO2691at 2811.632 kb on + strand, within SO2691at 2811.671 kb on - strandat 2811.849 kb on + strand, within SO2692at 2811.978 kb on + strandat 2811.989 kb on - strandat 2812.055 kb on + strand, within SO2693at 2812.062 kb on - strand, within SO2693at 2812.063 kb on - strand, within SO2693at 2812.127 kb on + strand, within SO2693at 2812.127 kb on + strand, within SO2693at 2812.127 kb on + strand, within SO2693at 2812.127 kb on + strand, within SO2693at 2812.135 kb on - strand, within SO2693at 2812.135 kb on - strand, within SO2693at 2812.135 kb on - strand, within SO2693at 2812.206 kb on + strand, within SO2693at 2812.282 kb on + strand, within SO2693at 2812.290 kb on - strand, within SO2693at 2812.291 kb on + strand, within SO2693at 2812.381 kb on - strand, within SO2693at 2812.394 kb on + strand, within SO2693at 2812.499 kb on + strand, within SO2693at 2812.649 kb on + strand, within SO2693at 2812.682 kb on - strand, within SO2693at 2812.698 kb on - strand, within SO2693at 2812.813 kb on + strand, within SO2693at 2812.821 kb on - strand, within SO2693at 2812.874 kb on - strand, within SO2693

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,810,767 + SO2690 0.26 +1.1
2,810,784 + SO2690 0.30 +0.3
2,810,817 - SO2690 0.36 +1.4
2,810,840 + SO2690 0.41 -1.8
2,810,887 + SO2690 0.50 -0.2
2,810,887 + SO2690 0.50 -0.6
2,810,895 - SO2690 0.52 +0.2
2,810,895 - SO2690 0.52 +0.4
2,810,957 + SO2690 0.64 +0.2
2,810,975 + SO2690 0.68 -0.5
2,810,975 + SO2690 0.68 +0.2
2,810,983 - SO2690 0.70 +0.2
2,810,983 - SO2690 0.70 -0.1
2,811,086 + +0.6
2,811,105 - -0.8
2,811,132 + -0.7
2,811,152 + +0.8
2,811,172 - -1.8
2,811,214 + SO2691 0.14 -0.6
2,811,356 - SO2691 0.38 +0.1
2,811,480 + SO2691 0.59 -0.2
2,811,502 + SO2691 0.63 +0.8
2,811,632 + SO2691 0.85 +0.1
2,811,671 - -0.5
2,811,849 + SO2692 0.68 -0.7
2,811,978 + -0.5
2,811,989 - -2.2
2,812,055 + SO2693 0.10 +2.4
2,812,062 - SO2693 0.11 +0.2
2,812,063 - SO2693 0.11 -0.6
2,812,127 + SO2693 0.15 -0.1
2,812,127 + SO2693 0.15 -0.3
2,812,127 + SO2693 0.15 +0.4
2,812,127 + SO2693 0.15 -0.3
2,812,135 - SO2693 0.16 +1.4
2,812,135 - SO2693 0.16 -0.2
2,812,135 - SO2693 0.16 +0.3
2,812,206 + SO2693 0.20 -1.8
2,812,282 + SO2693 0.26 -0.1
2,812,290 - SO2693 0.26 +0.1
2,812,291 + SO2693 0.26 +0.3
2,812,381 - SO2693 0.32 -1.1
2,812,394 + SO2693 0.33 +0.3
2,812,499 + SO2693 0.40 -0.4
2,812,649 + SO2693 0.50 -1.5
2,812,682 - SO2693 0.52 +0.1
2,812,698 - SO2693 0.54 -0.2
2,812,813 + SO2693 0.61 +0.3
2,812,821 - SO2693 0.62 -0.5
2,812,874 - SO2693 0.65 -0.1

Or see this region's nucleotide sequence