Strain Fitness in Shewanella oneidensis MR-1 around SO2509

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2507 and SO2508 are separated by 125 nucleotidesSO2508 and SO2509 are separated by 0 nucleotidesSO2509 and SO2510 are separated by 3 nucleotides SO2507: SO2507 - GGDEF domain protein (NCBI ptt file), at 2,633,593 to 2,635,497 SO2507 SO2508: SO2508 - RnfAE/NqrDE family protein (NCBI ptt file), at 2,635,623 to 2,636,201 SO2508 SO2509: SO2509 - iron-sulfur cluster-binding protein (NCBI ptt file), at 2,636,202 to 2,636,783 SO2509 SO2510: SO2510 - iron-sulfur cluster-binding protein (NCBI ptt file), at 2,636,787 to 2,639,159 SO2510 Position (kb) 2636 2637Strain fitness (log2 ratio) -1 0 1at 2635.204 kb on - strand, within SO2507at 2635.204 kb on - strand, within SO2507at 2635.237 kb on - strand, within SO2507at 2635.262 kb on + strand, within SO2507at 2635.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,635,204 - SO2507 0.85 -1.1
2,635,204 - SO2507 0.85 +0.3
2,635,237 - SO2507 0.86 -1.3
2,635,262 + SO2507 0.88 -0.1
2,635,396 - +0.9

Or see this region's nucleotide sequence