Strain Fitness in Shewanella oneidensis MR-1 around SO2411

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntserC and gyrA are separated by 99 nucleotidesgyrA and ubiG are separated by 385 nucleotides SO2410: serC - phosphoserine aminotransferase (NCBI ptt file), at 2,514,676 to 2,515,779 serC SO2411: gyrA - DNA gyrase, A subunit (NCBI ptt file), at 2,515,879 to 2,518,638 gyrA SO2413: ubiG - 3-demethylubiquinone-9 3-methyltransferase (NCBI ptt file), at 2,519,024 to 2,519,734 ubiG Position (kb) 2515 2516 2517 2518 2519Strain fitness (log2 ratio) -1 0 1at 2518.852 kb on + strandat 2518.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,518,852 + +0.7
2,518,944 + -0.7

Or see this region's nucleotide sequence