Strain Fitness in Shewanella oneidensis MR-1 around SO2130

Experiment: minimal media, aerobic, 0G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	minimal media, aerobic, 0G configuration
2,236,138	+		SO2129	0.36	+0.7
2,236,203	+		SO2129	0.42	-0.5
2,236,264	+		SO2129	0.48	-1.7
2,236,469	-		SO2129	0.66	-0.9
2,236,566	+		SO2129	0.74	+0.5
2,236,691	+		SO2129	0.86	+0.7
2,236,724	+		SO2129	0.89	+0.5
2,236,805	+				+0.6
2,236,861	-				-1.1
2,236,955	+				+0.2
2,236,963	-				+0.1
2,237,028	-				+0.3
2,237,068	+				-0.3
2,237,069	+				-0.1
2,237,071	+				+0.0
2,237,076	+				-0.9
2,237,077	-				-0.4
2,238,304	+				-1.1
2,238,304	+				+0.1
2,238,304	+				+0.7
2,238,304	+				+0.0
2,238,304	+				-0.3
2,238,305	+				-0.2
2,238,305	+				+0.4
2,238,305	+				+0.8
2,238,305	+				-0.2
2,238,305	+				-0.2
2,238,305	+				+0.3
2,238,305	+				+0.4
2,238,305	+				-1.3
2,238,305	+				-0.1
2,238,305	+				-0.5
2,238,305	+				-0.2
2,238,305	+				+0.3
2,238,305	+				+0.1
2,238,305	+				-0.2
2,238,305	+				+1.0
2,238,305	+				+0.5
2,238,305	+				+0.5
2,238,305	+				-0.8
2,238,305	+				-0.3
2,238,305	+				-0.3
2,238,305	+				-0.5
2,238,305	+				-0.1
2,238,305	+				-0.2
2,238,305	+				-0.2
2,238,305	+				-0.3
2,238,305	+				+0.3
2,238,305	+				+0.4
2,238,305	+				-0.5
2,238,305	+				-0.9
2,238,305	+				+0.3
2,238,305	+				-0.4
2,238,305	+				+0.0
2,238,305	+				+0.5
2,238,305	+				+0.2
2,238,305	+				+1.7
2,238,305	+				+0.3
2,238,305	+				+0.2
2,238,305	+				+0.5
2,238,305	+				-0.1
2,238,305	+				-0.4
2,238,305	+				-0.1
2,238,305	+				-0.3
2,238,305	+				-0.6
2,238,305	+				-0.5
2,238,305	+				-0.6
2,238,305	+				-0.6
2,238,305	+				+0.1
2,238,305	+				+0.2
2,238,305	+				-0.3
2,238,305	+				+0.1
2,238,305	+				-1.0
2,238,305	+				-0.4
2,238,305	+				-0.1
2,238,305	+				-0.1
2,238,305	+				-1.1
2,238,305	+				-0.1
2,238,305	+				-0.4
2,238,305	+				-0.6
2,238,310	+				+0.7
2,238,310	+				+0.0
2,238,310	+				+0.3
2,238,315	+				-0.5
2,238,315	+				-0.4
2,238,315	+				+0.7
2,238,315	+				-0.1
2,238,315	+				-2.1
2,238,315	+				+0.2
2,238,315	+				+0.1
2,238,315	+				-0.2
2,238,315	+				+0.3
2,238,315	+				-0.5
2,238,315	+				-0.1
2,238,315	+				+0.4
2,238,315	+				+0.8
2,238,315	+				-0.7
2,238,315	+				+0.6
2,238,315	+				-0.1
2,238,315	+				+0.2
2,238,315	+				-0.4
2,238,315	+				+0.9
2,238,315	+				-0.6
2,238,315	+				-0.3
2,238,315	+				+0.3
2,238,315	+				+0.6
2,238,315	+				-1.5
2,238,315	+				+0.5
2,238,315	+				-0.0
2,238,315	+				+0.2
2,238,315	+				-0.4
2,238,315	+				-1.5
2,238,315	+				+0.5
2,238,315	+				-0.5
2,238,315	+				+1.4
2,238,315	+				-0.6
2,238,315	+				-1.0
2,238,315	+				-0.5
2,238,315	+				+0.3
2,238,315	+				-1.2
2,238,315	+				+0.0
2,238,315	+				+0.5
2,238,315	+				-1.3
2,238,315	+				-2.1
2,238,315	+				+0.1
2,238,315	+				+0.7
2,238,315	+				+0.1
2,238,315	+				+0.7
2,238,315	+				+0.9
2,238,315	+				-1.2
2,238,315	+				+0.1
2,238,315	+				-2.3
2,238,315	+				+0.4
2,238,315	+				-0.6
2,238,315	+				+0.9
2,238,315	+				-1.3
2,238,315	+				+0.3
2,238,315	+				+1.1
2,238,315	+				+0.4
2,238,315	+				-0.3
2,238,315	+				+0.1
2,238,315	+				-0.1
2,238,315	+				-0.2
2,238,315	+				-1.2
2,238,315	+				-0.6
2,238,315	+				-0.3
2,238,315	+				+0.4
2,238,315	+				-0.3
2,238,315	+				-0.6
2,238,315	+				-0.3
2,238,325	+				-0.3
2,238,327	+				+0.7
2,238,327	+				+0.2
2,238,337	+				-0.5
2,238,337	+				+1.9
2,238,337	+				-0.6
2,238,347	-				+0.4
2,238,362	-				+0.3
2,238,370	+				+0.9
2,238,370	+				-0.7
2,238,370	+				-0.6
2,238,370	+				+1.1
2,238,378	-				+1.1
2,238,384	+				-1.2
2,238,384	+				+0.2
2,238,386	+		SO2132	0.10	+0.2
2,238,386	+		SO2132	0.10	-0.1
2,238,386	+		SO2132	0.10	-1.9
2,238,386	+		SO2132	0.10	-0.2
2,238,386	+		SO2132	0.10	-1.3
2,238,392	-		SO2132	0.11	-0.1
2,238,394	-		SO2132	0.11	+0.2
2,238,394	-		SO2132	0.11	+0.7
2,238,394	-		SO2132	0.11	-0.1
2,238,394	-		SO2132	0.11	-0.3
2,238,394	-		SO2132	0.11	+0.7
2,238,394	-		SO2132	0.11	-0.6
2,238,394	-		SO2132	0.11	+0.1
2,238,394	-		SO2132	0.11	-0.5
2,238,394	-		SO2132	0.11	+2.3
2,238,394	-		SO2132	0.11	-0.6
2,238,394	-		SO2132	0.11	+0.3
2,238,394	-		SO2132	0.11	+0.0
2,238,394	-		SO2132	0.11	+3.0
2,238,394	-		SO2132	0.11	+1.3
2,238,394	-		SO2132	0.11	-0.4
2,238,396	+		SO2132	0.11	+0.1
2,238,403	+		SO2132	0.12	+0.4
2,238,403	+		SO2132	0.12	-0.9
2,238,408	+		SO2132	0.13	+0.0
2,238,411	-		SO2132	0.13	-0.0
2,238,411	-		SO2132	0.13	-0.9
2,238,411	-		SO2132	0.13	-1.3
2,238,411	-		SO2132	0.13	+0.6
2,238,411	-		SO2132	0.13	-0.6
2,238,416	-		SO2132	0.14	-0.6
2,238,416	-		SO2132	0.14	+1.5
2,238,416	-		SO2132	0.14	+0.2
2,238,418	+		SO2132	0.14	-0.4
2,238,418	+		SO2132	0.14	+0.4
2,238,418	+		SO2132	0.14	+0.7
2,238,418	+		SO2132	0.14	-0.9
2,238,421	-		SO2132	0.14	-0.1
2,238,426	-		SO2132	0.15	+1.5
2,238,426	-		SO2132	0.15	+1.5
2,238,426	-		SO2132	0.15	+0.2
2,238,426	-		SO2132	0.15	+0.3
2,238,426	-		SO2132	0.15	-1.3
2,238,427	-		SO2132	0.15	+0.4
2,238,430	+		SO2132	0.15	-0.7
2,238,430	+		SO2132	0.15	+0.3
2,238,430	+		SO2132	0.15	+0.5
2,238,430	+		SO2132	0.15	-0.3
2,238,430	+		SO2132	0.15	+0.2
2,238,430	+		SO2132	0.15	-1.9
2,238,430	+		SO2132	0.15	+1.1
2,238,430	+		SO2132	0.15	-0.6
2,238,430	+		SO2132	0.15	+0.1
2,238,430	+		SO2132	0.15	-1.3
2,238,430	+		SO2132	0.15	+1.2
2,238,430	+		SO2132	0.15	+0.9
2,238,430	+		SO2132	0.15	-0.1
2,238,438	-		SO2132	0.16	+1.2
2,238,438	-		SO2132	0.16	-0.3
2,238,438	-		SO2132	0.16	-0.4
2,238,438	-		SO2132	0.16	+0.4
2,238,438	-		SO2132	0.16	-0.2
2,238,438	-		SO2132	0.16	-0.2
2,238,438	-		SO2132	0.16	+0.7
2,238,438	-		SO2132	0.16	-0.1
2,238,438	-		SO2132	0.16	+0.7
2,238,438	-		SO2132	0.16	-0.2
2,238,438	-		SO2132	0.16	+0.5
2,238,500	+		SO2132	0.24	-0.3
2,238,503	-		SO2132	0.24	+1.1
2,238,505	+		SO2132	0.24	+0.1
2,238,506	-		SO2132	0.24	+0.2
2,238,508	-		SO2132	0.25	-0.6
2,238,508	-		SO2132	0.25	+0.0
2,238,508	-		SO2132	0.25	-0.9
2,238,508	-		SO2132	0.25	+0.1
2,238,508	-		SO2132	0.25	+0.2
2,238,508	-		SO2132	0.25	-0.1
2,238,508	-		SO2132	0.25	+0.2
2,238,508	-		SO2132	0.25	+0.5
2,238,509	+		SO2132	0.25	-0.3
2,238,513	-		SO2132	0.25	+0.2
2,238,519	+		SO2132	0.26	+0.1
2,238,519	+		SO2132	0.26	-0.5
2,238,519	+		SO2132	0.26	-0.9
2,238,525	+		SO2132	0.27	-0.5
2,238,525	+		SO2132	0.27	+1.0
2,238,525	+		SO2132	0.27	-3.3
2,238,527	-		SO2132	0.27	-0.0
2,238,530	+		SO2132	0.27	+0.3
2,238,530	+		SO2132	0.27	-0.2
2,238,533	-		SO2132	0.28	+0.1
2,238,533	-		SO2132	0.28	-0.4
2,238,540	+		SO2132	0.29	-0.3
2,238,547	-		SO2132	0.29	+0.7
2,238,547	-		SO2132	0.29	+0.3
2,238,548	-		SO2132	0.30	-0.0
2,238,559	-		SO2132	0.31	-1.5
2,238,560	-		SO2132	0.31	-0.7
2,238,564	+		SO2132	0.31	-1.3
2,238,564	+		SO2132	0.31	+0.6
2,238,566	+		SO2132	0.32	-1.0
2,238,566	+		SO2132	0.32	+0.3
2,238,566	+		SO2132	0.32	-0.2
2,238,566	+		SO2132	0.32	+0.5
2,238,566	+		SO2132	0.32	+0.0
2,238,566	+		SO2132	0.32	-1.0
2,238,566	+		SO2132	0.32	+2.0
2,238,566	+		SO2132	0.32	-0.3
2,238,566	+		SO2132	0.32	+0.3
2,238,566	+		SO2132	0.32	-0.1
2,238,566	+		SO2132	0.32	+0.1
2,238,566	+		SO2132	0.32	+0.0
2,238,574	-		SO2132	0.33	-0.3
2,238,574	-		SO2132	0.33	-0.3
2,238,574	-		SO2132	0.33	-0.3
2,238,574	-		SO2132	0.33	-0.0
2,238,574	-		SO2132	0.33	-0.5
2,238,574	-		SO2132	0.33	+0.1
2,238,574	-		SO2132	0.33	+0.1
2,238,574	-		SO2132	0.33	-0.9
2,238,574	-		SO2132	0.33	-0.1
2,238,574	-		SO2132	0.33	+0.4
2,238,574	-		SO2132	0.33	+0.0
2,238,574	-		SO2132	0.33	+0.9
2,238,574	-		SO2132	0.33	-1.6
2,238,574	-		SO2132	0.33	+0.1
2,238,574	-		SO2132	0.33	-1.1
2,238,624	+		SO2132	0.39	+0.6
2,238,624	+		SO2132	0.39	+1.3
2,238,624	+		SO2132	0.39	-0.5
2,238,624	+		SO2132	0.39	-2.1
2,238,628	+		SO2132	0.39	+0.2
2,238,632	-		SO2132	0.40	-0.5
2,238,632	-		SO2132	0.40	-0.6
2,238,633	+		SO2132	0.40	-1.6
2,238,646	-		SO2132	0.41	-0.5
2,238,653	+		SO2132	0.42	-0.7
2,238,653	+		SO2132	0.42	-0.1
2,238,661	-		SO2132	0.43	+1.6
2,238,697	+		SO2132	0.47	+0.0
2,238,698	-		SO2132	0.47	-0.0
2,238,698	-		SO2132	0.47	-0.5
2,238,698	-		SO2132	0.47	+0.2
2,238,761	-		SO2132	0.55	-0.7
2,238,768	-		SO2132	0.56	-1.3
2,238,775	-		SO2132	0.57	+0.8
2,238,830	+		SO2132	0.63	+0.1
2,238,830	+		SO2132	0.63	-0.3
2,238,846	-		SO2132	0.65	+1.2
2,238,848	-		SO2132	0.65	+0.8
2,238,889	+		SO2132	0.70	+0.2
2,238,892	-		SO2132	0.71	+0.9
2,238,899	-		SO2132	0.71	-0.3