Strain Fitness in Shewanella oneidensis MR-1 around SO2086

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpheS and pheT are separated by 14 nucleotidespheT and ihfA are separated by 3 nucleotidesihfA and SO2088 are separated by 96 nucleotides SO2085: pheS - phenylalanyl-tRNA synthetase, alpha subunit (NCBI ptt file), at 2,180,858 to 2,181,841 pheS SO2086: pheT - phenylalanyl-tRNA synthetase, beta subunit (NCBI ptt file), at 2,181,856 to 2,184,243 pheT SO2087: ihfA - integration host factor, alpha subunit (NCBI ptt file), at 2,184,247 to 2,184,543 ihfA SO2088: SO2088 - lipid A biosynthesis acyltransferase, putative (NCBI ptt file), at 2,184,640 to 2,185,578 SO2088 Position (kb) 2181 2182 2183 2184 2185Strain fitness (log2 ratio) -1 0 1at 2184.948 kb on - strand, within SO2088at 2184.950 kb on - strand, within SO2088at 2185.166 kb on + strand, within SO2088

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,184,948 - SO2088 0.33 -0.9
2,184,950 - SO2088 0.33 +1.3
2,185,166 + SO2088 0.56 -0.4

Or see this region's nucleotide sequence