Strain Fitness in Shewanella oneidensis MR-1 around SO1931

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucA and sucB are separated by 48 nucleotidessucB and sucC are separated by 117 nucleotides SO1930: sucA - 2-oxoglutarate dehydrogenase, E1 component (NCBI ptt file), at 2,034,323 to 2,037,142 sucA SO1931: sucB - 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (NCBI ptt file), at 2,037,191 to 2,038,378 sucB SO1932: sucC - succinyl-CoA synthase, beta subunit (NCBI ptt file), at 2,038,496 to 2,039,662 sucC Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -1 0 1at 2039.289 kb on + strand, within sucC

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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2,039,289 + sucC SO1932 0.68 +0.8

Or see this region's nucleotide sequence