Strain Fitness in Shewanella oneidensis MR-1 around SO1360

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrimM and trmD are separated by 15 nucleotidestrmD and rplS are separated by 34 nucleotidesrplS and aroF are separated by 296 nucleotides SO1358: rimM - 16S rRNA processing protein RimM (NCBI ptt file), at 1,413,702 to 1,414,235 rimM SO1359: trmD - tRNA (guanine-N1)-methyltransferase (NCBI ptt file), at 1,414,251 to 1,414,997 trmD SO1360: rplS - ribosomal protein L19 (NCBI ptt file), at 1,415,032 to 1,415,385 rplS SO1361: aroF - phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive (NCBI ptt file), at 1,415,682 to 1,416,773 aroF Position (kb) 1415 1416Strain fitness (log2 ratio) -1 0 1at 1415.680 kb on + strandat 1415.984 kb on - strand, within aroFat 1416.049 kb on + strand, within aroFat 1416.122 kb on - strand, within aroFat 1416.133 kb on - strand, within aroFat 1416.172 kb on - strand, within aroFat 1416.204 kb on - strand, within aroFat 1416.329 kb on + strand, within aroFat 1416.344 kb on + strand, within aroFat 1416.361 kb on + strand, within aroFat 1416.370 kb on - strand, within aroF

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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1,415,680 + -0.2
1,415,984 - aroF SO1361 0.28 -0.8
1,416,049 + aroF SO1361 0.34 -0.2
1,416,122 - aroF SO1361 0.40 +0.0
1,416,133 - aroF SO1361 0.41 +0.4
1,416,172 - aroF SO1361 0.45 +0.3
1,416,204 - aroF SO1361 0.48 +0.2
1,416,329 + aroF SO1361 0.59 -0.5
1,416,344 + aroF SO1361 0.61 -0.8
1,416,361 + aroF SO1361 0.62 -0.3
1,416,370 - aroF SO1361 0.63 -0.1

Or see this region's nucleotide sequence