Strain Fitness in Shewanella oneidensis MR-1 around SO1357

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntffh and rpsP are separated by 218 nucleotidesrpsP and rimM are separated by 17 nucleotidesrimM and trmD are separated by 15 nucleotides SO1356: ffh - signal recognition particle protein Ffh (NCBI ptt file), at 1,411,844 to 1,413,217 ffh SO1357: rpsP - ribosomal protein S16 (NCBI ptt file), at 1,413,436 to 1,413,684 rpsP SO1358: rimM - 16S rRNA processing protein RimM (NCBI ptt file), at 1,413,702 to 1,414,235 rimM SO1359: trmD - tRNA (guanine-N1)-methyltransferase (NCBI ptt file), at 1,414,251 to 1,414,997 trmD Position (kb) 1413 1414Strain fitness (log2 ratio) -1 0 1at 1413.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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1,413,246 - +1.0

Or see this region's nucleotide sequence