Strain Fitness in Shewanella oneidensis MR-1 around SO1348

Experiment: minimal media, aerobic, 0G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlepB and rnc are separated by 1 nucleotidesrnc and era overlap by 4 nucleotides SO1347: lepB - signal peptidase I (NCBI ptt file), at 1,404,007 to 1,404,924 lepB SO1348: rnc - ribonuclease III (NCBI ptt file), at 1,404,926 to 1,405,606 rnc SO1349: era - GTP-binding protein Era (NCBI ptt file), at 1,405,603 to 1,406,622 era Position (kb) 1404 1405 1406Strain fitness (log2 ratio) -1 0 1at 1404.156 kb on + strand, within lepBat 1404.445 kb on + strand, within lepBat 1404.467 kb on + strand, within lepBat 1404.559 kb on + strand, within lepBat 1404.608 kb on + strand, within lepBat 1404.764 kb on + strand, within lepBat 1404.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
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1,404,156 + lepB SO1347 0.16 +0.9
1,404,445 + lepB SO1347 0.48 -0.9
1,404,467 + lepB SO1347 0.50 -1.4
1,404,559 + lepB SO1347 0.60 -0.1
1,404,608 + lepB SO1347 0.65 +0.6
1,404,764 + lepB SO1347 0.82 -1.3
1,404,875 + -0.1

Or see this region's nucleotide sequence