Strain Fitness in Shewanella oneidensis MR-1 around SO1284

Experiment: minimal media, aerobic, 0G configuration

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO1282 and tRNA-Met-5 are separated by 273 nucleotidestRNA-Met-5 and rpoD are separated by 259 nucleotidesrpoD and dnaG are separated by 135 nucleotides SO1282: SO1282 - ISSod11, transposase (NCBI ptt file), at 1,334,005 to 1,334,961 SO1282 SO_t023: tRNA-Met-5 - tRNA-Met (RefSeq), at 1,335,235 to 1,335,311 tRNA-Met-5 SO1284: rpoD - RNA polymerase sigma-70 factor (NCBI ptt file), at 1,335,571 to 1,337,421 rpoD SO1286: dnaG - DNA primase (NCBI ptt file), at 1,337,557 to 1,339,281 dnaG Position (kb) 1335 1336 1337 1338Strain fitness (log2 ratio) -1 0 1at 1335.028 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration
remove
1,335,028 - -0.2

Or see this region's nucleotide sequence