Experiment: minimal media, aerobic, 0G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0860 and SO0861 are separated by 107 nucleotides SO0861 and serA are separated by 134 nucleotides
SO0860: SO0860 - response regulator (NCBI ptt file), at 888,057 to 889,076
SO0860
SO0861: SO0861 - conserved hypothetical protein (NCBI ptt file), at 889,184 to 890,140
SO0861
SO0862: serA - D-3-phosphoglycerate dehydrogenase (NCBI ptt file), at 890,275 to 891,504
serA
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1 at 888.241 kb on + strand, within SO0860 at 888.249 kb on - strand, within SO0860 at 888.268 kb on - strand, within SO0860 at 888.321 kb on - strand, within SO0860 at 888.341 kb on - strand, within SO0860 at 888.341 kb on - strand at 888.407 kb on - strand, within SO0860 at 888.477 kb on - strand, within SO0860 at 888.534 kb on + strand, within SO0860 at 888.535 kb on - strand, within SO0860 at 888.546 kb on + strand, within SO0860 at 888.554 kb on - strand, within SO0860 at 888.554 kb on - strand, within SO0860 at 888.629 kb on + strand, within SO0860 at 888.635 kb on + strand, within SO0860 at 888.637 kb on - strand, within SO0860 at 888.643 kb on - strand, within SO0860 at 888.746 kb on - strand, within SO0860 at 888.850 kb on - strand, within SO0860 at 888.931 kb on + strand, within SO0860 at 888.939 kb on - strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.941 kb on + strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 888.949 kb on - strand, within SO0860 at 889.141 kb on - strand at 889.181 kb on + strand at 890.181 kb on - strand at 890.329 kb on + strand at 890.372 kb on - strand at 890.419 kb on - strand, within serA at 890.424 kb on + strand, within serA at 890.426 kb on + strand, within serA at 890.484 kb on + strand, within serA at 890.517 kb on + strand, within serA at 890.517 kb on + strand, within serA at 890.525 kb on - strand, within serA at 890.527 kb on + strand, within serA at 890.636 kb on - strand, within serA at 890.756 kb on - strand, within serA at 890.783 kb on - strand, within serA at 890.933 kb on + strand, within serA at 890.933 kb on + strand, within serA at 890.933 kb on + strand, within serA at 890.941 kb on - strand, within serA at 890.941 kb on - strand, within serA at 890.982 kb on + strand, within serA at 890.990 kb on - strand, within serA at 890.990 kb on - strand, within serA at 891.080 kb on + strand, within serA at 891.118 kb on - strand, within serA
Per-strain Table
Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration remove 888,241 + SO0860 0.18 +0.7 888,249 - SO0860 0.19 +0.3 888,268 - SO0860 0.21 -0.3 888,321 - SO0860 0.26 +0.4 888,341 - SO0860 0.28 -0.2 888,341 - +0.5 888,407 - SO0860 0.34 -0.4 888,477 - SO0860 0.41 +0.5 888,534 + SO0860 0.47 -0.3 888,535 - SO0860 0.47 +0.6 888,546 + SO0860 0.48 -0.3 888,554 - SO0860 0.49 +0.6 888,554 - SO0860 0.49 +0.7 888,629 + SO0860 0.56 +0.1 888,635 + SO0860 0.57 +0.5 888,637 - SO0860 0.57 +0.3 888,643 - SO0860 0.57 +0.2 888,746 - SO0860 0.68 +1.1 888,850 - SO0860 0.78 -0.3 888,931 + SO0860 0.86 -0.7 888,939 - SO0860 0.86 +0.3 888,941 + SO0860 0.87 -1.0 888,941 + SO0860 0.87 +0.4 888,941 + SO0860 0.87 +0.7 888,949 - SO0860 0.87 -0.4 888,949 - SO0860 0.87 -0.5 888,949 - SO0860 0.87 -1.0 888,949 - SO0860 0.87 -0.4 888,949 - SO0860 0.87 +0.5 889,141 - +0.3 889,181 + +0.5 890,181 - -0.6 890,329 + -1.5 890,372 - +1.0 890,419 - serA SO0862 0.12 -0.9 890,424 + serA SO0862 0.12 -1.7 890,426 + serA SO0862 0.12 -0.5 890,484 + serA SO0862 0.17 -0.0 890,517 + serA SO0862 0.20 -0.9 890,517 + serA SO0862 0.20 -2.5 890,525 - serA SO0862 0.20 -1.1 890,527 + serA SO0862 0.20 -0.7 890,636 - serA SO0862 0.29 -0.8 890,756 - serA SO0862 0.39 -1.1 890,783 - serA SO0862 0.41 -1.3 890,933 + serA SO0862 0.53 -2.0 890,933 + serA SO0862 0.53 -1.2 890,933 + serA SO0862 0.53 -1.8 890,941 - serA SO0862 0.54 -1.5 890,941 - serA SO0862 0.54 -1.3 890,982 + serA SO0862 0.57 -1.4 890,990 - serA SO0862 0.58 -1.2 890,990 - serA SO0862 0.58 +0.5 891,080 + serA SO0862 0.65 -1.0 891,118 - serA SO0862 0.69 -2.2
Or see this region's nucleotide sequence