Experiment: minimal media, aerobic, 0G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0837 and SO0839 are separated by 228 nucleotides SO0839 and SO0840 are separated by 122 nucleotides
SO0837: SO0837 - beta-lactamase, putative (NCBI ptt file), at 854,515 to 855,312
SO0837
SO0839: SO0839 - transcriptional regulator, LysR family (NCBI ptt file), at 855,541 to 856,452
SO0839
SO0840: SO0840 - acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase (NCBI ptt file), at 856,575 to 861,128
SO0840
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1 at 854.637 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 855.108 kb on + strand, within SO0837 at 855.116 kb on - strand, within SO0837 at 855.163 kb on - strand, within SO0837 at 855.200 kb on + strand, within SO0837 at 855.208 kb on + strand, within SO0837 at 855.283 kb on - strand at 855.347 kb on - strand at 855.356 kb on + strand at 855.388 kb on - strand at 855.564 kb on + strand at 855.583 kb on - strand at 856.281 kb on + strand, within SO0839
Per-strain Table
Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration remove 854,637 + SO0837 0.15 +0.4 854,639 + SO0837 0.16 +0.6 854,639 + SO0837 0.16 -2.4 854,645 - SO0837 0.16 -0.3 854,645 - SO0837 0.16 -0.6 855,108 + SO0837 0.74 +0.4 855,116 - SO0837 0.75 +0.2 855,163 - SO0837 0.81 +0.0 855,200 + SO0837 0.86 +0.4 855,208 + SO0837 0.87 +0.5 855,283 - -0.0 855,347 - -0.3 855,356 + -0.3 855,388 - +1.0 855,564 + +1.3 855,583 - -0.0 856,281 + SO0839 0.81 +1.0
Or see this region's nucleotide sequence