Experiment: minimal media, aerobic, 0G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0683 and SO0684 overlap by 28 nucleotides SO0684 and SO0685 are separated by 59 nucleotides SO0685 and SO0686 are separated by 118 nucleotides SO0686 and SO0687 overlap by 8 nucleotides SO0687 and SO0688 overlap by 4 nucleotides
SO0683: SO0683 - hypothetical protein (NCBI ptt file), at 703,429 to 703,908
SO0683
SO0684: SO0684 - ISSod1, transposase OrfB (NCBI ptt file), at 703,881 to 704,690
SO0684
SO0685: SO0685 - ISSod1, transposase OrfA (NCBI ptt file), at 704,750 to 705,040
SO0685
SO0686: SO0686 - hypothetical protein (NCBI ptt file), at 705,159 to 705,623
SO0686
SO0687: SO0687 - hypothetical protein (NCBI ptt file), at 705,616 to 705,918
SO0687
SO0688: SO0688 - hypothetical protein (NCBI ptt file), at 705,915 to 707,714
SO0688
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.755 kb on - strand, within SO0683 at 703.825 kb on - strand, within SO0683 at 703.872 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.882 kb on - strand at 703.892 kb on - strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.110 kb on + strand at 705.110 kb on + strand at 705.110 kb on + strand at 705.116 kb on - strand at 705.116 kb on - strand at 705.116 kb on - strand at 705.118 kb on - strand at 705.213 kb on - strand, within SO0686 at 705.246 kb on + strand, within SO0686 at 705.257 kb on + strand, within SO0686 at 705.257 kb on + strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.467 kb on - strand, within SO0686 at 705.614 kb on - strand at 705.618 kb on + strand at 705.656 kb on - strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.685 kb on + strand, within SO0687 at 705.685 kb on - strand, within SO0687 at 705.693 kb on - strand, within SO0687 at 705.695 kb on + strand, within SO0687 at 705.858 kb on + strand, within SO0687 at 705.866 kb on - strand, within SO0687 at 705.911 kb on + strand at 705.949 kb on + strand at 705.952 kb on - strand at 705.969 kb on + strand at 705.975 kb on - strand at 705.980 kb on - strand at 706.000 kb on - strand at 706.005 kb on - strand at 706.013 kb on - strand at 706.014 kb on - strand at 706.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction minimal media, aerobic, 0G configuration remove 703,755 - SO0683 0.68 -0.5 703,825 - SO0683 0.82 +0.0 703,872 - -0.7 703,877 - +1.2 703,877 - +0.3 703,877 - +2.0 703,877 - -0.5 703,877 - -0.2 703,882 - -0.3 703,892 - -0.2 705,093 + -0.1 705,093 + -0.1 705,093 + +0.0 705,093 + -0.3 705,093 + +0.0 705,093 + -1.0 705,093 + +0.7 705,110 + -0.7 705,110 + +0.2 705,110 + -0.3 705,116 - +0.1 705,116 - +0.1 705,116 - +0.0 705,118 - -0.7 705,213 - SO0686 0.12 +0.1 705,246 + SO0686 0.19 -1.3 705,257 + SO0686 0.21 +1.7 705,257 + SO0686 0.21 -0.4 705,265 - SO0686 0.23 -0.2 705,265 - SO0686 0.23 -0.2 705,265 - SO0686 0.23 -0.2 705,265 - SO0686 0.23 +0.1 705,467 - SO0686 0.66 +0.0 705,614 - -0.1 705,618 + -1.1 705,656 - SO0687 0.13 -0.3 705,678 + SO0687 0.20 -0.4 705,678 + SO0687 0.20 +0.4 705,678 + SO0687 0.20 -0.2 705,685 + SO0687 0.23 +0.2 705,685 - SO0687 0.23 -1.8 705,693 - SO0687 0.25 +0.2 705,695 + SO0687 0.26 -0.2 705,858 + SO0687 0.80 +0.1 705,866 - SO0687 0.83 -0.5 705,911 + -0.3 705,949 + +0.4 705,952 - -0.1 705,969 + -0.2 705,975 - +0.2 705,980 - -0.6 706,000 - -0.2 706,005 - +0.2 706,013 - +0.0 706,014 - +0.1 706,015 - -0.3
Or see this region's nucleotide sequence